Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_N14
(568 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 238 3e-63
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 233 5e-62
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 141 3e-34
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 48 7e-06
04_01_0440 + 5746474-5746662,5746895-5747251 28 4.5
12_02_0494 + 19689245-19689414,19689605-19689894,19690665-19690747 27 7.9
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 238 bits (582), Expect = 3e-63
Identities = 108/148 (72%), Positives = 123/148 (83%)
Frame = +3
Query: 51 CRAIQMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKV 230
C ++ MGK RG+ RK HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+
Sbjct: 166 CPSVNMGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKI 224
Query: 231 GVXAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEXNDEXLXAGFGRKGHAVGDI 410
G+ AKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IE NDE L AGFGRKGHAVGDI
Sbjct: 225 GIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDI 284
Query: 411 PGVRFKVVKVANVSLLALYKEKKERPXS 494
PGVRFKVVKV+ VSLLAL+KEKKE+P S
Sbjct: 285 PGVRFKVVKVSGVSLLALFKEKKEKPRS 312
Score = 232 bits (568), Expect = 1e-61
Identities = 106/141 (75%), Positives = 119/141 (84%)
Frame = +3
Query: 66 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVXAK 245
MGK RG+ RK HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+ AK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 246 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEXNDEXLXAGFGRKGHAVGDIPGVRF 425
QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IE NDE L AGFGRKGHAVGDIPGVRF
Sbjct: 60 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRF 119
Query: 426 KVVKVANVSLLALYKEKKERP 488
KVVKV+ VSLLAL+KEKKE+P
Sbjct: 120 KVVKVSGVSLLALFKEKKEKP 140
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 233 bits (571), Expect = 5e-62
Identities = 107/143 (74%), Positives = 120/143 (83%)
Frame = +3
Query: 66 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVXAK 245
MGK RG+ RK HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+ AK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 246 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEXNDEXLXAGFGRKGHAVGDIPGVRF 425
QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IE NDE L AGFGRKGHAVGDIPGVRF
Sbjct: 60 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRF 119
Query: 426 KVVKVANVSLLALYKEKKERPXS 494
KVVKV+ VSLLAL+KEKKE+P S
Sbjct: 120 KVVKVSGVSLLALFKEKKEKPRS 142
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 141 bits (342), Expect = 3e-34
Identities = 63/96 (65%), Positives = 74/96 (77%)
Frame = +3
Query: 72 KPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVXAKQP 251
K G+ RK HRR QRWADK +KK+H G +WK PF G+SHAKGIVLEK+G+ AKQP
Sbjct: 74 KTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQP 132
Query: 252 NSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEXND 359
NSAI KC RVQL+KNGKK+ AFVP DGCLN I+ N+
Sbjct: 133 NSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENE 168
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 47.6 bits (108), Expect = 7e-06
Identities = 21/27 (77%), Positives = 23/27 (85%)
Frame = +3
Query: 357 DEXLXAGFGRKGHAVGDIPGVRFKVVK 437
DE L +GFG KGHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>04_01_0440 + 5746474-5746662,5746895-5747251
Length = 181
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +2
Query: 125 AMGGQRIQESPHGYEMEG*PFRWCI-SRKGHRPR 223
A+GG P GY+ +G PF C KG+ PR
Sbjct: 126 AIGGMPAIAVPAGYDNQGVPFAICFGGLKGYEPR 159
>12_02_0494 + 19689245-19689414,19689605-19689894,19690665-19690747
Length = 180
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 168 KWKANPFGGASHAKGIVLEKVGVXAKQPNSAIRKC 272
KW AN GG IVL + + ++ PNSA + C
Sbjct: 46 KWAAN-LGGTPPGSCIVLLHISLLSRVPNSAPKFC 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,226,010
Number of Sequences: 37544
Number of extensions: 357127
Number of successful extensions: 795
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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