Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_N14
         (568 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...   252   2e-67
Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    44   8e-05
U41011-4|AAA82287.1|  294|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical ...    27   9.4  
AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical ...    27   9.4  
AC084156-1|AAK68491.2|  466|Caenorhabditis elegans Hypothetical ...    27   9.4  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score =  252 bits (616), Expect = 2e-67
 Identities = 113/143 (79%), Positives = 127/143 (88%)
 Frame = +3

Query: 66  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVXAK 245
           MGKP+G+ TARK   HR+EQRW DK +KKAH+GT+WK+NPFGGASHAKGIVLEK+GV AK
Sbjct: 1   MGKPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAK 60

Query: 246 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEXNDEXLXAGFGRKGHAVGDIPGVRF 425
           QPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN +E NDE L +GFGR GHAVGDIPGVRF
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRF 120

Query: 426 KVVKVANVSLLALYKEKKERPXS 494
           K+VKVAN SL+AL+K KKERP S
Sbjct: 121 KIVKVANTSLIALFKGKKERPRS 143


>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 44.0 bits (99), Expect = 8e-05
 Identities = 27/66 (40%), Positives = 40/66 (60%)
 Frame = +3

Query: 192 GASHAKGIVLEKVGVXAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEXNDEXLX 371
           G SH KGIVL+ V    K+PNS  RKC  V+L   G +V A++P  G  ++++ + + L 
Sbjct: 72  GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL-STGAEVCAYIPNVG--HNLQEHSQVLV 128

Query: 372 AGFGRK 389
            G GR+
Sbjct: 129 KG-GRR 133


>U41011-4|AAA82287.1|  294|Caenorhabditis elegans Hypothetical
           protein D2024.4 protein.
          Length = 294

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 137 VRPSLFTTVVHVLTRRSYSSG 75
           VRP + TTV+HV+ R    SG
Sbjct: 189 VRPGIMTTVIHVMDRNPMKSG 209


>AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical
           protein Y59A8B.9 protein.
          Length = 187

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 430 TLKRTPGMSPTA*PLRPNPAXSXSS 356
           T  RTP  +P A P RP P+ S ++
Sbjct: 38  TTMRTPAATPAAPPTRPTPSRSSAA 62


>AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical
           protein Y59A8B.7 protein.
          Length = 316

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 430 TLKRTPGMSPTA*PLRPNPAXSXSS 356
           T  RTP  +P A P RP P+ S ++
Sbjct: 167 TTMRTPAATPAAPPTRPTPSRSSAA 191


>AC084156-1|AAK68491.2|  466|Caenorhabditis elegans Hypothetical
           protein Y46E12BL.4 protein.
          Length = 466

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -3

Query: 161 HVGFLEFFVRPSLFTTVVHVLTRRS--YSSGFTHLDSTTPIGYGWE 30
           HV  +E+  R      VV V T+ +  +++G+T L  TT   YGW+
Sbjct: 158 HVWQIEWPERQRGTHAVVGVATKNAPLHAAGYTALIGTTDESYGWD 203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,287,872
Number of Sequences: 27780
Number of extensions: 280059
Number of successful extensions: 568
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)