Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_N13
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc...    94   1e-20
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    27   1.3  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    25   7.1  
SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p...    25   7.1  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   9.4  

>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 126

 Score = 94.3 bits (224), Expect = 1e-20
 Identities = 43/78 (55%), Positives = 61/78 (78%)
 Frame = +2

Query: 149 PCSKELRQKFNXKSMPIRKDDEVHVVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANG 328
           P SKELR+++  +S+P+R+DD++ V+RG  KG++ GK+  VYRKKF++ IER+ REKANG
Sbjct: 33  PLSKELREQYKIRSLPVRRDDQITVIRGSNKGRE-GKITSVYRKKFLLLIERVTREKANG 91

Query: 329 ATXYVGIHPSKCVIVKLN 382
           A+  VGI  SK VI KL+
Sbjct: 92  ASAPVGIDASKVVITKLH 109



 Score = 58.4 bits (135), Expect = 6e-10
 Identities = 30/53 (56%), Positives = 37/53 (69%)
 Frame = +1

Query: 52  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLL*GTKTKIQXKIHAYSERR 210
           MKF++ VTSSRRK RK HF APS +RRVLMS+PL    + + Q KI +   RR
Sbjct: 1   MKFSRDVTSSRRKQRKAHFGAPSSVRRVLMSAPL--SKELREQYKIRSLPVRR 51


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -2

Query: 340 IXCCTIGLFSLNPLNVYNKLFPIHLHHFA---NLLAFVVSTYNMNFIVFPNRH 191
           + C +I LFS  PL+  N+ F I+L  F+    L   ++ST  + F  F  RH
Sbjct: 825 LTCISIPLFSFEPLSKKNR-FLINLFRFSFSFILYNLLISTSTVFFAGFFRRH 876


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 464 VFTLVFAKCSQSALCSAIEDCFAVFIH 384
           +F LV    S   +C  IED F   IH
Sbjct: 588 LFNLVATNASDPYICGIIEDTFEDIIH 614


>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 464 VFTLVFAKCSQSALCSAIEDCFAVFIHH 381
           +F  VFA CS S+ CS +   F +F+ +
Sbjct: 140 LFARVFALCSSSSPCS-VAKAFTLFLEY 166


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 8/40 (20%), Positives = 20/40 (50%)
 Frame = +3

Query: 27   CRFGEERQNEVQQAGDFLKKEKQEEAFQCSFTYKASVDVL 146
            C F  ++ +E++  G +L  +    +F C   +   V+++
Sbjct: 3300 CEFHHQKFDEIEVPGQYLLHKDNNNSFSCIERFLPEVELI 3339


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,112,091
Number of Sequences: 5004
Number of extensions: 42958
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)