Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_N13
         (533 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0263 + 2136858-2137331                                          107   4e-24
12_01_0323 - 2459854-2460306                                          107   6e-24
11_01_0317 - 2365493-2365786,2365825-2365953                           76   2e-14
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     28   5.4  
09_06_0298 - 22117451-22118698                                         27   9.5  

>01_01_0263 + 2136858-2137331
          Length = 157

 Score =  107 bits (258), Expect = 4e-24
 Identities = 49/75 (65%), Positives = 63/75 (84%)
 Frame = +2

Query: 155 SKELRQKFNXKSMPIRKDDEVHVVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANGAT 334
           S ELR K+N +S+PIRKDDEV VVRG YKG++ GKV+QVYR+++V+++ERI REK NG+T
Sbjct: 35  SSELRHKYNVRSIPIRKDDEVQVVRGSYKGRE-GKVVQVYRRRWVIHVERITREKVNGST 93

Query: 335 XYVGIHPSKCVIVKL 379
             VGIHPSK V+ KL
Sbjct: 94  VNVGIHPSKVVVTKL 108



 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 24/34 (70%), Positives = 28/34 (82%)
 Frame = +1

Query: 52  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPL 153
           MK N +VTSSRRK RK HF+APS +RRVLMS+ L
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAAL 34



 Score = 35.1 bits (77), Expect = 0.036
 Identities = 17/27 (62%), Positives = 22/27 (81%)
 Frame = +3

Query: 384 MNKDRKAILDRRAKGRLAALGKDKGKY 464
           ++KDRKAILDR+A+GR  A  K KGK+
Sbjct: 110 LDKDRKAILDRKARGR--AADKAKGKF 134


>12_01_0323 - 2459854-2460306
          Length = 150

 Score =  107 bits (257), Expect = 6e-24
 Identities = 49/75 (65%), Positives = 63/75 (84%)
 Frame = +2

Query: 155 SKELRQKFNXKSMPIRKDDEVHVVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANGAT 334
           S ELR K+N +S+PIRKDDEV VVRG YKG++ GKV+QVYR+++V+++ERI REK NG+T
Sbjct: 35  STELRHKYNVRSIPIRKDDEVQVVRGSYKGRE-GKVVQVYRRRWVIHVERITREKVNGST 93

Query: 335 XYVGIHPSKCVIVKL 379
             VGIHPSK V+ KL
Sbjct: 94  VNVGIHPSKVVVTKL 108



 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 24/34 (70%), Positives = 28/34 (82%)
 Frame = +1

Query: 52  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPL 153
           MK N +VTSSRRK RK HF+APS +RRVLMS+ L
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAAL 34



 Score = 34.3 bits (75), Expect = 0.063
 Identities = 17/27 (62%), Positives = 21/27 (77%)
 Frame = +3

Query: 384 MNKDRKAILDRRAKGRLAALGKDKGKY 464
           ++KDRKAILDR+A GR  A  K KGK+
Sbjct: 110 LDKDRKAILDRKASGR--AADKAKGKF 134


>11_01_0317 - 2365493-2365786,2365825-2365953
          Length = 140

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 34/54 (62%), Positives = 46/54 (85%)
 Frame = +2

Query: 218 HVVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANGATXYVGIHPSKCVIVKL 379
           +VVRG YKG++ GKV+QVYR+++V+++ERI REK NG+T  VGIHPSK V+ KL
Sbjct: 43  NVVRGSYKGRE-GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKL 95



 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 24/34 (70%), Positives = 28/34 (82%)
 Frame = +1

Query: 52  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPL 153
           MK N +VTSSRRK RK HF+APS +RRVLMS+ L
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAAL 34



 Score = 34.3 bits (75), Expect = 0.063
 Identities = 17/27 (62%), Positives = 21/27 (77%)
 Frame = +3

Query: 384 MNKDRKAILDRRAKGRLAALGKDKGKY 464
           ++KDRKAILDR+A GR  A  K KGK+
Sbjct: 97  LDKDRKAILDRKASGR--AADKAKGKF 121


>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
 Frame = +2

Query: 161  ELRQKFNXKS-MPIRKDDEVHVVRGHYKGQQVGKVMQ--VYRKKFVVYIERIQREKANGA 331
            E+ ++ N KS +P  K+D   V  GH + + V +VMQ  +     +  IE +Q E++NG 
Sbjct: 3849 EVEEEKNDKSNIPKEKEDRFTV--GHTE-ESVHEVMQSVLVSDADLRSIETLQCEESNGV 3905

Query: 332  TXYVGIHPSKCVIVKLN 382
                    S C+IV+ N
Sbjct: 3906 KSTGDYLESGCIIVETN 3922


>09_06_0298 - 22117451-22118698
          Length = 415

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 214 SSCCTWTLQRPT 249
           +SCCTW L RPT
Sbjct: 394 ASCCTWFLPRPT 405


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,634,528
Number of Sequences: 37544
Number of extensions: 278356
Number of successful extensions: 641
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)