Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_N11
         (487 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein L34|S...    71   7e-14
SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein L34|Sc...    67   1e-12
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c...    26   2.6  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    26   3.5  
SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein...    25   8.0  

>SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 112

 Score = 71.3 bits (167), Expect = 7e-14
 Identities = 36/59 (61%), Positives = 40/59 (67%)
 Frame = +1

Query: 169 CGQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 345
           CG     L+GI   RP E +RL + KKTV+R YGG L    VK RIVRAFLIEEQKIVK
Sbjct: 44  CGDTGVPLQGIPALRPREFARLSHNKKTVQRAYGGCLSANAVKDRIVRAFLIEEQKIVK 102



 Score = 46.8 bits (106), Expect = 2e-06
 Identities = 18/27 (66%), Positives = 25/27 (92%)
 Frame = +2

Query: 38  MVQRLTFRRRLSYNTKSNQRRIVRTPG 118
           M QR+T+RRRL+YNT+SN+ RI++TPG
Sbjct: 1   MAQRVTYRRRLAYNTRSNRTRIIKTPG 27


>SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 111

 Score = 67.3 bits (157), Expect = 1e-12
 Identities = 34/59 (57%), Positives = 39/59 (66%)
 Frame = +1

Query: 169 CGQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 345
           CG     L+GI   RP E +RL + +K V+R YGG L    VK RIVRAFLIEEQKIVK
Sbjct: 44  CGDTGVPLQGIPALRPREFARLSHNQKKVQRAYGGCLSANAVKDRIVRAFLIEEQKIVK 102



 Score = 46.8 bits (106), Expect = 2e-06
 Identities = 18/27 (66%), Positives = 25/27 (92%)
 Frame = +2

Query: 38  MVQRLTFRRRLSYNTKSNQRRIVRTPG 118
           M QR+T+RRRL+YNT+SN+ RI++TPG
Sbjct: 1   MAQRVTYRRRLAYNTRSNKTRIIKTPG 27


>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 413 LSXKIHFVAFFADLVLACCALRTFTIFCSS 324
           L   IH  A   +  L+CC   T  I+CSS
Sbjct: 9   LCKAIHLKAIIEEPKLSCCHCETCRIWCSS 38


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +1

Query: 64  TTVVQHKIKSKKNSKDTGLAAWFISMSKSPRRSQGCG 174
           TT++  +++ K+N ++    +W  S+++S  RS   G
Sbjct: 295 TTIIAEELRRKRNIQEMSETSWKPSIAESASRSDEKG 331


>SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein
           Mad3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -3

Query: 236 QRRERSAGLAGWIPRSLLLH*PQPWDLLGLFDILINQAAS 117
           +R+E +     W+   L L  P+  D LG F +  ++  S
Sbjct: 269 RRKENNISATSWVGEKLPLKSPRKLDPLGKFQVHCDEEVS 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,507,493
Number of Sequences: 5004
Number of extensions: 27438
Number of successful extensions: 52
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)