Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_N11
(487 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0106 - 14636773-14636863,14636948-14637057,14638107-146381... 66 1e-11
08_02_0790 - 21214282-21214369,21214455-21214564,21215478-212155... 66 1e-11
08_01_0372 + 3286861-3286939,3287220-3287299,3289041-3289150,328... 66 1e-11
05_05_0034 - 21741148-21741275,21741890-21741928,21742007-217421... 29 2.0
02_01_0339 - 2412243-2413337 29 2.0
03_02_0383 + 7966929-7968951,7969085-7969104 29 2.6
03_05_0407 - 23906388-23906966,23907028-23907915,23908141-239087... 28 3.5
12_02_1134 - 26373018-26373389,26373506-26373595,26374265-263743... 28 4.6
05_07_0112 - 27755604-27756449,27756624-27756887,27757428-277575... 27 6.0
10_02_0113 + 5410413-5410471,5411330-5413309,5413535-5413594,541... 27 8.0
06_03_1318 - 29282562-29282566,29282727-29282810,29282913-292833... 27 8.0
02_05_1325 - 35708046-35708207,35708297-35708374,35708466-357085... 27 8.0
>09_04_0106 -
14636773-14636863,14636948-14637057,14638107-14638186,
14638302-14638380
Length = 119
Score = 66.1 bits (154), Expect = 1e-11
Identities = 36/68 (52%), Positives = 46/68 (67%), Gaps = 4/68 (5%)
Frame = +1
Query: 154 RRSQG--CGQCKSKLRGIQPARPAE--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFL 321
+R+ G C K++GI RPAE RSRL ++TV R YGGVL V++RI+RAFL
Sbjct: 37 KRASGPKCPVTGKKIQGIPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFL 96
Query: 322 IEEQKIVK 345
+EEQKIVK
Sbjct: 97 VEEQKIVK 104
Score = 50.4 bits (115), Expect = 7e-07
Identities = 24/43 (55%), Positives = 29/43 (67%)
Frame = +2
Query: 38 MVQRLTFRRRLSYNTKSNQRRIVRTPGWPLGLSVCQKAQEDPK 166
MVQRLT+R+R SY TKSNQ R+V+TPG L +K PK
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPK 43
>08_02_0790 -
21214282-21214369,21214455-21214564,21215478-21215557,
21215659-21215737
Length = 118
Score = 66.1 bits (154), Expect = 1e-11
Identities = 36/68 (52%), Positives = 46/68 (67%), Gaps = 4/68 (5%)
Frame = +1
Query: 154 RRSQG--CGQCKSKLRGIQPARPAE--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFL 321
+R+ G C K++GI RPAE RSRL ++TV R YGGVL V++RI+RAFL
Sbjct: 37 KRASGPKCPVTGKKIQGIPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFL 96
Query: 322 IEEQKIVK 345
+EEQKIVK
Sbjct: 97 VEEQKIVK 104
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/43 (55%), Positives = 29/43 (67%)
Frame = +2
Query: 38 MVQRLTFRRRLSYNTKSNQRRIVRTPGWPLGLSVCQKAQEDPK 166
MVQRLT+R+R SY TKSNQ R+V+TPG L +K PK
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGRLVYQYTKKRASGPK 43
>08_01_0372 +
3286861-3286939,3287220-3287299,3289041-3289150,
3289224-3289311
Length = 118
Score = 66.1 bits (154), Expect = 1e-11
Identities = 36/68 (52%), Positives = 46/68 (67%), Gaps = 4/68 (5%)
Frame = +1
Query: 154 RRSQG--CGQCKSKLRGIQPARPAE--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFL 321
+R+ G C K++GI RPAE RSRL ++TV R YGGVL V++RI+RAFL
Sbjct: 37 KRASGPKCPVTGKKIQGIPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFL 96
Query: 322 IEEQKIVK 345
+EEQKIVK
Sbjct: 97 VEEQKIVK 104
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/43 (55%), Positives = 29/43 (67%)
Frame = +2
Query: 38 MVQRLTFRRRLSYNTKSNQRRIVRTPGWPLGLSVCQKAQEDPK 166
MVQRLT+R+R SY TKSNQ R+V+TPG L +K PK
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGRLVYQYTKKRASGPK 43
>05_05_0034 - 21741148-21741275,21741890-21741928,21742007-21742121,
21742227-21742292,21743213-21743371,21743573-21743609,
21743757-21744194,21744735-21744817,21744920-21744956,
21745146-21745214,21745316-21745407,21745481-21745565,
21745903-21745982,21746327-21746724,21746813-21747717,
21747825-21747915,21748617-21750680,21750681-21750749,
21750850-21751273,21751644-21751763
Length = 1832
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +1
Query: 151 PRRSQGCGQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQR 303
P Q CG C +L+ + E + C +T + +CH CV +R
Sbjct: 1660 PLMQQSCGYCADELKDTR-----EAPKPCCNPQTEGGLCSNEMCHNCVSER 1705
>02_01_0339 - 2412243-2413337
Length = 364
Score = 29.1 bits (62), Expect = 2.0
Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Frame = +1
Query: 109 DTGLAAWFISMSKSPRRSQGCGQCKSKLRGIQPARPAERSRLCYRKKTVKRVY---GGVL 279
DT LAAW +S S PR Q K G A P E L ++ V GG L
Sbjct: 242 DTVLAAWDVSASPQPRAPAASVQSK----GFSVASPGEWKGLAAPREVASHVVHLGGGKL 297
Query: 280 C 282
C
Sbjct: 298 C 298
>03_02_0383 + 7966929-7968951,7969085-7969104
Length = 680
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/67 (26%), Positives = 28/67 (41%)
Frame = +1
Query: 91 SKKNSKDTGLAAWFISMSKSPRRSQGCGQCKSKLRGIQPARPAERSRLCYRKKTVKRVYG 270
S+++S G W+I + R G+ K G + P+ R +CY + G
Sbjct: 491 SRRSSNGNGSIDWWIDGVRRSSRDWASGEFVPKSGGAVSSTPSMRGTVCY--VAPEYGGG 548
Query: 271 GVLCHKC 291
G L KC
Sbjct: 549 GPLSEKC 555
>03_05_0407 -
23906388-23906966,23907028-23907915,23908141-23908753,
23908858-23909021
Length = 747
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 36 KWC-SGLHSGDDCRTTQNQIKEE**GHRAGRLVYQYVKKPKKI 161
KW SG HS +DC+ + QI+ G++ + KKP K+
Sbjct: 577 KWYNSGAHSTNDCKVFRQQIQA---AIEGGKIKFDDSKKPMKV 616
>12_02_1134 -
26373018-26373389,26373506-26373595,26374265-26374323,
26375372-26375381
Length = 176
Score = 27.9 bits (59), Expect = 4.6
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Frame = +1
Query: 112 TGLAAWFISMSKSPRRS--QGCGQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGGVLCH 285
+G +A + KS RR+ + G+ K+ I A PA++ + +KK K G +
Sbjct: 12 SGCSATSLGQPKSKRRTGDKARGEKKALKVKINLASPAKKIKKSSKKKGKKGTVAGRIGR 71
Query: 286 KCVKQRIVRA-FLIEEQK 336
KC R + FL E K
Sbjct: 72 KCTLSRDSKGRFLPRESK 89
>05_07_0112 - 27755604-27756449,27756624-27756887,27757428-27757532,
27757626-27758249,27759048-27759596,27759665-27760372,
27760449-27760658,27761266-27761421,27761524-27761664,
27762015-27762101,27762209-27762309,27763071-27763293,
27763384-27763548,27763621-27763713,27763801-27764292,
27764729-27764805,27765184-27765681,27765818-27766046
Length = 1855
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 73 VQHKIKSKKNSKDTGLAAWFISMSKSPRRSQGCGQCKSKLRGIQPARPAERS 228
V I S + G +A +S K+PR+ G+ + + RG++ RP + S
Sbjct: 1635 VPRGISSSPKIEFRGYSASAVSSEKAPRKYARRGRNRGRGRGLRTVRPRQPS 1686
>10_02_0113 +
5410413-5410471,5411330-5413309,5413535-5413594,
5416037-5418047
Length = 1369
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -3
Query: 374 LVLACCALRTFTIFCSSIKKALTMRCLTHL 285
LVLA +L+ F F SSI+K T R L+ L
Sbjct: 37 LVLASFSLQVFLHFFSSIRKGNTSRLLSSL 66
>06_03_1318 - 29282562-29282566,29282727-29282810,29282913-29283380,
29283735-29283917,29284362-29284467,29284627-29284651,
29284736-29284855,29284920-29284997,29285646-29285774,
29285976-29285989,29286168-29287944,29288344-29288489,
29288921-29291029
Length = 1747
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1
Query: 217 QV*LAGYHGVCSCIDHSLGIF 155
Q L +G C C DHSL IF
Sbjct: 1036 QTTLIDMYGKCCCFDHSLAIF 1056
>02_05_1325 -
35708046-35708207,35708297-35708374,35708466-35708512,
35708731-35708839
Length = 131
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 133 ISMSKSPRRSQGCGQCKSKLRGIQPARPAERSRLCYR 243
+S SP R + C + ++ I+P RP++ SRLC R
Sbjct: 91 MSSENSPTRIRRCLEEGAEDFLIKPVRPSDVSRLCNR 127
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,016,246
Number of Sequences: 37544
Number of extensions: 193534
Number of successful extensions: 418
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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