Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_N11
         (487 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457741-15|CAM36357.1|  110|Caenorhabditis elegans Hypothetical...    60   6e-10
U21308-3|AAB93322.2|  321|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AF106592-1|AAK21365.2|  654|Caenorhabditis elegans Semaphorin re...    27   7.2  
U14635-13|AAC46654.2|  322|Caenorhabditis elegans Hypothetical p...    27   9.5  

>CU457741-15|CAM36357.1|  110|Caenorhabditis elegans Hypothetical
           protein C42C1.14 protein.
          Length = 110

 Score = 60.5 bits (140), Expect = 6e-10
 Identities = 31/58 (53%), Positives = 35/58 (60%)
 Frame = +1

Query: 169 CGQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIV 342
           C     KL GI PARP     L   ++TV R YGG L    VK+RI RAFL+EEQKIV
Sbjct: 44  CRDTGVKLHGITPARPIALRLLKRNERTVTRAYGGCLSPNAVKERITRAFLVEEQKIV 101



 Score = 48.0 bits (109), Expect = 4e-06
 Identities = 22/43 (51%), Positives = 31/43 (72%)
 Frame = +2

Query: 38  MVQRLTFRRRLSYNTKSNQRRIVRTPGWPLGLSVCQKAQEDPK 166
           M  R+T+RRRLSYNT SN++R+V+TPG  L +   +K  + PK
Sbjct: 1   MSLRVTYRRRLSYNTTSNKKRLVKTPGGRLVVQYIKKRGQIPK 43


>U21308-3|AAB93322.2|  321|Caenorhabditis elegans Hypothetical
           protein ZK1290.5 protein.
          Length = 321

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 123 RLVYQYVKKPKKIPRLWSMQEQTPWYPAS*TC 218
           ++  +Y K P +I   WS+Q+  P  P S  C
Sbjct: 207 KIASKYQKSPAQICLRWSIQQNVPTVPKSTDC 238


>AF106592-1|AAK21365.2|  654|Caenorhabditis elegans Semaphorin
           related protein 2 protein.
          Length = 654

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 20/76 (26%), Positives = 33/76 (43%)
 Frame = +1

Query: 22  VKKLENGAAAYIQATTVVQHKIKSKKNSKDTGLAAWFISMSKSPRRSQGCGQCKSKLRGI 201
           + +   G +++ QA  +  HK+K     K  G+       S+SP  ++GCG  K    G 
Sbjct: 197 ILRTPRGLSSFEQANFLSMHKVK-----KVRGVEEVLFFFSESPMETEGCGLHKVARVG- 250

Query: 202 QPARPAERSRLCYRKK 249
           +        RL Y K+
Sbjct: 251 RVCEDDPGGRLSYNKE 266


>U14635-13|AAC46654.2|  322|Caenorhabditis elegans Hypothetical
           protein C27H5.6 protein.
          Length = 322

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 261 TFHCFLTVAKTGTFSRSSW 205
           TFHC LTV +    +R SW
Sbjct: 109 TFHCLLTVERVLAVNRVSW 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,514,394
Number of Sequences: 27780
Number of extensions: 163632
Number of successful extensions: 382
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)