Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_N09
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.4  
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar...    27   2.4  
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    27   2.4  
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    26   5.5  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    25   7.2  
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    25   9.5  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -2

Query: 352 SSSLEPANFFXSIPSIPFVSN*SGALSCPTQAASSATSRGSSDTAESIS 206
           SSS   ++ F S  S   +S+ S   S PT ++S+ +S  SS ++ S S
Sbjct: 308 SSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFS 356



 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -2

Query: 352 SSSLEPANFFXSIPSIPFVSN*SGALSCPTQAASSATSRGSSDTAESI 209
           SSS    +   S  SIP  S+ S + S    ++SS+++  SS ++ SI
Sbjct: 225 SSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSI 272


>SPBC26H8.09c |snf59||SWI/SNF complex subunit
           Snf59|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 515

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 453 KNAVMVINEMIPKEQIANNFKVE-PNPNKHFKQTTPTYCADLTID 584
           K +  + N  + + +   NFK+E P P+  F+   P  C D  I+
Sbjct: 126 KESTNLDNSNMDESENQKNFKIEEPKPSGDFRNEGPKQCDDSKIE 170


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 80  HRSSGNCRYTNIDTCILLKKNHTYLAYGVFTTQGSGRQSFQ 202
           HR++GN  Y  +   +L   +H +   G+  T GS   S Q
Sbjct: 237 HRATGNHSYAQVMRAVLRSNSH-FRVLGLTATPGSSTASVQ 276


>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +1

Query: 121 MHTIEKKSHISRLWRFYNTRVG-PPIISTSKWILQYLMSRVMS 246
           + TIE+K+ ISRL  + N  V  P I S S      ++SRV+S
Sbjct: 295 LRTIERKAKISRLGIWKNISVSIPDINSLSLKDYSAVVSRVIS 337


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +1

Query: 121 MHTI-EKKSHISRLWRFYNTR 180
           +HT+ E+KSHI   W  +NT+
Sbjct: 62  LHTLDERKSHIKSDWHRFNTK 82


>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +1

Query: 241 MSPRMQPASDKTMHHFSLTRMVWR 312
           ++P + PA+  T H+++LT  ++R
Sbjct: 525 VTPALMPANTDTRHYWNLTSNIYR 548


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,641,287
Number of Sequences: 5004
Number of extensions: 54420
Number of successful extensions: 169
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)