Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_N09
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016420-7|AAB65303.1|  428|Caenorhabditis elegans Serpentine re...    31   0.71 
U70852-15|AAK29824.1|  543|Caenorhabditis elegans Hypothetical p...    28   5.0  
AF016441-6|AAX55687.1|  440|Caenorhabditis elegans Paps (adenosi...    28   5.0  
AF016441-5|AAX55688.1|  408|Caenorhabditis elegans Paps (adenosi...    28   5.0  
AF016441-4|AAX55686.1|  425|Caenorhabditis elegans Paps (adenosi...    28   5.0  
AC006662-3|AAF39895.1|  368|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z83236-2|CAB05778.1|  337|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U40942-2|AAC47072.2|  201|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.       28   6.7  
AL117206-10|CAB60452.2|  258|Caenorhabditis elegans Hypothetical...    28   6.7  
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated...    28   6.7  
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated...    28   6.7  
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated...    28   6.7  

>AF016420-7|AAB65303.1|  428|Caenorhabditis elegans Serpentine
           receptor, class r protein8 protein.
          Length = 428

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = -1

Query: 344 LGASQFLXFDSLHTIRVKLKWCIVLSDAGCILGDITRLIRYCRIHFEVEMIGGP 183
           LG  +FL   SL     K K C V +   C+LG +  ++   RI F +E +G P
Sbjct: 61  LGPFRFLVKASLLDCSTKSKCCSVFT---CLLGVVMVVVTLIRISFLMEAVGAP 111


>U70852-15|AAK29824.1|  543|Caenorhabditis elegans Hypothetical
           protein F45E4.11 protein.
          Length = 543

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -2

Query: 502 AICSLGIISLITMTAFFGVRSRLRCWFCLRRRSLFVTXFTPG 377
           A+ S G+   I+   FF   S     FCL    +F    TPG
Sbjct: 383 AVASAGLAICISFVPFFNKESAFLAVFCLCGAMIFAGLHTPG 424


>AF016441-6|AAX55687.1|  440|Caenorhabditis elegans Paps (adenosine
           3'-phosphate 5'-phosphosulfate) transporter protein 1,
           isoform b protein.
          Length = 440

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 538 CLFGFGSTLKLLAICSLGIISLITMTAFFGV 446
           C   FG++L LL+  S G  S IT T+F G+
Sbjct: 256 CTIAFGASLFLLSSSSKGAGSTITYTSFSGM 286


>AF016441-5|AAX55688.1|  408|Caenorhabditis elegans Paps (adenosine
           3'-phosphate 5'-phosphosulfate) transporter protein 1,
           isoform c protein.
          Length = 408

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 538 CLFGFGSTLKLLAICSLGIISLITMTAFFGV 446
           C   FG++L LL+  S G  S IT T+F G+
Sbjct: 256 CTIAFGASLFLLSSSSKGAGSTITYTSFSGM 286


>AF016441-4|AAX55686.1|  425|Caenorhabditis elegans Paps (adenosine
           3'-phosphate 5'-phosphosulfate) transporter protein 1,
           isoform a protein.
          Length = 425

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 538 CLFGFGSTLKLLAICSLGIISLITMTAFFGV 446
           C   FG++L LL+  S G  S IT T+F G+
Sbjct: 241 CTIAFGASLFLLSSSSKGAGSTITYTSFSGM 271


>AC006662-3|AAF39895.1|  368|Caenorhabditis elegans Hypothetical
           protein H23L24.4 protein.
          Length = 368

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = -1

Query: 548 LLEVLVRVWLHFEIIGNLLLRNHFVDHHDCILRREESPEVLVLSAATFLVCH 393
           L+ +L+   L+F I+ N+  R    DH     +   S  +L+     F +CH
Sbjct: 217 LVPLLLLSVLNFRILSNISNRRVSFDHKSRFAQERRSVTLLISIVTMFFLCH 268


>Z83236-2|CAB05778.1|  337|Caenorhabditis elegans Hypothetical
           protein K10H10.2 protein.
          Length = 337

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 471 INEMIPKEQIANNFKVEPNPNKHFKQTTP 557
           + ++IP   I N F    NP  H+K T P
Sbjct: 136 LRDVIPNAYILNQFGNPANPEAHYKTTGP 164


>U40942-2|AAC47072.2|  201|Caenorhabditis elegans Hypothetical
           protein K02E10.6 protein.
          Length = 201

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 462 VMVINEMIPKEQIANNFKVEPNPNKHFKQTTPTYCADLTIDG 587
           V++  ++ P+E    N K EP P  +F Q T +  A    DG
Sbjct: 8   VLLTVQVCPEENWLPNRKEEPRPVSYFSQRTRSLNAGYATDG 49


>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
          Length = 6632

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 447  TPKNAVMVINEMIPKEQIANNFKVEPNPNKHFKQTTP 557
            TPK  V    E +PKE I ++ K + +P+   K+ +P
Sbjct: 1350 TPKRRVSFAEEELPKEVIDSDRKKKKSPSPDKKEKSP 1386


>AL117206-10|CAB60452.2|  258|Caenorhabditis elegans Hypothetical
           protein Y67A10A.2 protein.
          Length = 258

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +1

Query: 508 ISKWSQTRTSTSSK-RPPRTAQTSPL--TAPCTKDTVRTS 618
           +++W++TRT TS     P T +T+ +  T PCT  TV  S
Sbjct: 114 VNQWTRTRTCTSKDFFCPCTGETTNIVYTCPCTAVTVINS 153


>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
            protein 89, isoform a protein.
          Length = 6632

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 447  TPKNAVMVINEMIPKEQIANNFKVEPNPNKHFKQTTP 557
            TPK  V    E +PKE I ++ K + +P+   K+ +P
Sbjct: 1350 TPKRRVSFAEEELPKEVIDSDRKKKKSPSPDKKEKSP 1386


>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
            protein 89, isoform g protein.
          Length = 7122

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 447  TPKNAVMVINEMIPKEQIANNFKVEPNPNKHFKQTTP 557
            TPK  V    E +PKE I ++ K + +P+   K+ +P
Sbjct: 1350 TPKRRVSFAEEELPKEVIDSDRKKKKSPSPDKKEKSP 1386


>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
            protein 89, isoform b protein.
          Length = 8081

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 447  TPKNAVMVINEMIPKEQIANNFKVEPNPNKHFKQTTP 557
            TPK  V    E +PKE I ++ K + +P+   K+ +P
Sbjct: 1350 TPKRRVSFAEEELPKEVIDSDRKKKKSPSPDKKEKSP 1386


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,061,544
Number of Sequences: 27780
Number of extensions: 326786
Number of successful extensions: 1027
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)