Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_N09
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    36   5e-04
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   4.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.5  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.9  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 35.5 bits (78), Expect = 5e-04
 Identities = 23/68 (33%), Positives = 32/68 (47%)
 Frame = +3

Query: 450 PKNAVMVINEMIPKEQIANNFKVEPNPNKHFKQTTPTYCADLTIDGTVYQGYGENKLLAR 629
           PKNAV  +NE+  K         +  P        P +   + IDG  Y+G G  K +A+
Sbjct: 34  PKNAVCALNEL--KSGAVYKVVDQTGPTH-----APIFTIAVQIDGQTYEGKGRTKKMAK 86

Query: 630 SAAAEQAV 653
            AAAE A+
Sbjct: 87  HAAAELAL 94


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 477 EMIPKEQIANNFKVEPNPNKHFKQT 551
           ++I   Q A+N ++EP P    +QT
Sbjct: 173 DVIEVIQKAHNMELEPTPGNTLRQT 197


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = +3

Query: 450 PKNAVMVINEMIPKEQIANNFKVEPNPNKHFKQTTP 557
           PK++       IPK  ++     +P PN    Q +P
Sbjct: 356 PKSSESSTGSSIPKLNLSTALMSQPPPNFGVSQVSP 391


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/39 (20%), Positives = 18/39 (46%)
 Frame = +3

Query: 453 KNAVMVINEMIPKEQIANNFKVEPNPNKHFKQTTPTYCA 569
           +N +  ++ +  K  +   +  +P  N+  K+T    CA
Sbjct: 182 ENELRALSSLFSKGCLVGTWSPDPAINRRLKETYSNMCA 220


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/39 (20%), Positives = 18/39 (46%)
 Frame = +3

Query: 453 KNAVMVINEMIPKEQIANNFKVEPNPNKHFKQTTPTYCA 569
           +N +  ++ +  K  +   +  +P  N+  K+T    CA
Sbjct: 182 ENELRALSSLFSKGCLVGTWSPDPAINRRLKETYSNMCA 220


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/39 (20%), Positives = 18/39 (46%)
 Frame = +3

Query: 453 KNAVMVINEMIPKEQIANNFKVEPNPNKHFKQTTPTYCA 569
           +N +  ++ +  K  +   +  +P  N+  K+T    CA
Sbjct: 182 ENELRALSSLFSKGCLVGTWSPDPAINRRLKETYSNMCA 220


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 505 IISKWSQTRTSTSSKRPPRTAQTSPLTAP 591
           I +  + T T+T++   P T Q +  T P
Sbjct: 661 ITTTTTTTTTTTTTTTTPNTTQNASATTP 689


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,142
Number of Sequences: 438
Number of extensions: 3898
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)