Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_N02
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 234 7e-63
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 127 2e-30
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 118 6e-28
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb... 110 1e-25
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha... 89 7e-19
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce... 79 4e-16
SPAC1687.14c |||EF hand family protein, unknown role|Schizosacch... 44 1e-05
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi... 41 1e-04
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 36 0.005
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo... 36 0.007
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ... 31 0.15
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 29 0.44
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom... 29 0.77
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 28 1.0
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 27 1.8
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 27 2.4
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 27 3.1
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 27 3.1
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 27 3.1
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 26 5.5
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 26 5.5
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 26 5.5
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 234 bits (573), Expect = 7e-63
Identities = 109/145 (75%), Positives = 128/145 (88%)
Frame = +2
Query: 107 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVXADGNGTI 286
LT+EQIAEF+EAFSLFD+D DG IT+ ELG VMRSLGQ+PT AELQDMINEV ADGNGTI
Sbjct: 6 LTDEQIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTI 65
Query: 287 DFPEFLTMMARKMXDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDE 466
DF EFLTMMARKM DTD+EEE+REAF+VFDKDGNG+I+ EL HV+T+LGE+L+ EEV +
Sbjct: 66 DFTEFLTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVAD 125
Query: 467 MIREADIDGDGQVNYEEFVTMMTSK 541
MIREAD DGDG +NYEEF +++SK
Sbjct: 126 MIREADTDGDGVINYEEFSRVISSK 150
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 127 bits (306), Expect = 2e-30
Identities = 65/144 (45%), Positives = 93/144 (64%)
Frame = +2
Query: 110 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVXADGNGTID 289
++EQ E KEAF L+D D DG I T +G+V+RSLG N T+AEL + NE+ ID
Sbjct: 4 SKEQTDEMKEAFVLYDIDKDGLIPTSHVGSVLRSLGINVTDAELAKLSNEL----GDAID 59
Query: 290 FPEFLTMMARKMXDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEM 469
+F++ ++ K+ +T+SEEE +AFRVFDKD +G+I A+ M LGEKL+D EV M
Sbjct: 60 EKKFMSFVSNKLRETESEEEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLM 119
Query: 470 IREADIDGDGQVNYEEFVTMMTSK 541
++EAD G +Y +FV + +K
Sbjct: 120 VQEADPTNSGSFDYYDFVQRIMAK 143
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 118 bits (285), Expect = 6e-28
Identities = 56/143 (39%), Positives = 84/143 (58%)
Frame = +2
Query: 104 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVXADGNGT 283
++TEEQ + EAF LFD D D I EL MR+LG N ++E+ ++ + G G
Sbjct: 30 EITEEQRQDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGY 89
Query: 284 IDFPEFLTMMARKMXDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVD 463
+ +F+ +M K+ + D EEI+ AF +FD D G IS LR V L E + D+E++
Sbjct: 90 LQMEDFVRVMTEKIVERDPLEEIKRAFELFDDDETGKISLRNLRRVAKELNENIDDQELE 149
Query: 464 EMIREADIDGDGQVNYEEFVTMM 532
MI E D+D DG++N +EF+ +M
Sbjct: 150 AMIEEFDLDQDGEINEQEFIAIM 172
Score = 52.0 bits (119), Expect = 7e-08
Identities = 26/69 (37%), Positives = 39/69 (56%)
Frame = +2
Query: 335 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 514
+ ++I EAF++FD D + I ELR M LG EV +++R+ D G G + E
Sbjct: 34 EQRQDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGYLQME 93
Query: 515 EFVTMMTSK 541
+FV +MT K
Sbjct: 94 DFVRVMTEK 102
>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 141
Score = 110 bits (265), Expect = 1e-25
Identities = 57/136 (41%), Positives = 89/136 (65%), Gaps = 2/136 (1%)
Frame = +2
Query: 131 FKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVXADGNGTIDFPEFLTM 310
+K+AFSLFD+ G G I +G ++R+ GQNPT AE+ ++ + + A+ +D +FL +
Sbjct: 8 YKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEIESTLPAE----VDMEQFLQV 63
Query: 311 MARKMX-DTDSE-EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD 484
+ R D + EE + F+VFDKD G I ELR+V+T+LGEKL++EE+DE+++
Sbjct: 64 LNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVP 123
Query: 485 IDGDGQVNYEEFVTMM 532
+ DG VNY +FV M+
Sbjct: 124 VK-DGMVNYHDFVQMI 138
Score = 41.9 bits (94), Expect = 8e-05
Identities = 20/62 (32%), Positives = 36/62 (58%)
Frame = +2
Query: 128 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVXADGNGTIDFPEFLT 307
EF + F +FDKD G I EL V+ SLG+ + E+ +++ V +G +++ +F+
Sbjct: 78 EFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVK-DGMVNYHDFVQ 136
Query: 308 MM 313
M+
Sbjct: 137 MI 138
>SPAC926.03 |rlc1||myosin II regulatory light chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 88.6 bits (210), Expect = 7e-19
Identities = 49/140 (35%), Positives = 77/140 (55%)
Frame = +2
Query: 104 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVXADGNGT 283
QLT QI E KEAF+L DKDGDG I +++ T++ SL Q+ +E D IN + N
Sbjct: 41 QLTSSQIQELKEAFALLDKDGDGNIGREDVKTMLTSLNQDASE----DSINHMFESINPP 96
Query: 284 IDFPEFLTMMARKMXDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVD 463
I+ FLT M + ++ EAF FD +G I + +R ++++G+++ +EV+
Sbjct: 97 INLAAFLTAMGSMLCRISPRNDLLEAFSTFDDTQSGKIPISTMRDALSSMGDRMDPQEVE 156
Query: 464 EMIREADIDGDGQVNYEEFV 523
++R G YE+FV
Sbjct: 157 SILR--SYTSHGVFYYEKFV 174
Score = 28.3 bits (60), Expect = 1.0
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = +2
Query: 395 ISAAELRHVMTNLGEKLTDEEVDEMIREA----DIDGDGQVNYEEFVTMMTS 538
++A + + +LT ++ E+ +EA D DGDG + E+ TM+TS
Sbjct: 26 VAAQAAKRASSGAFAQLTSSQIQEL-KEAFALLDKDGDGNIGREDVKTMLTS 76
>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 174
Score = 79.4 bits (187), Expect = 4e-16
Identities = 46/142 (32%), Positives = 79/142 (55%), Gaps = 5/142 (3%)
Frame = +2
Query: 110 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVXADGNGTID 289
+ E+I ++ F D + G+I E ++ S+ NP + L +++E DG G +D
Sbjct: 19 SNEEIERIRKRFIKIDANQSGSIDRNEFLSIP-SVASNPLASRLFSVVDE---DGGGDVD 74
Query: 290 FPEFLTMMARKMXDTDSEEEIREAFRVFDKDGNGFISAAELRHVM-----TNLGEKLTDE 454
F EF+ ++ + EE+++ AF+++D D +G+IS EL V+ TNL E +
Sbjct: 75 FQEFINSLSVFSVHGNKEEKLKFAFKIYDIDRDGYISNGELYLVLKMMVGTNLREDQLQQ 134
Query: 455 EVDEMIREADIDGDGQVNYEEF 520
VD+ I E D D DG++++EEF
Sbjct: 135 IVDKTIMEVDKDRDGKISFEEF 156
>SPAC1687.14c |||EF hand family protein, unknown
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 76
Score = 44.4 bits (100), Expect = 1e-05
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = +2
Query: 335 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDG-DGQVNY 511
+ +EE EAF +FD G+I +LR LGE LT E++ M+ D+ G +G+V+
Sbjct: 9 EMDEEAEEAFDLFDVTHKGYIDFEDLRRSCAQLGENLTKEQLQLML---DLAGTNGKVSR 65
Query: 512 EEFVTM 529
EEF +
Sbjct: 66 EEFAEL 71
Score = 35.5 bits (78), Expect = 0.007
Identities = 23/62 (37%), Positives = 32/62 (51%)
Frame = +2
Query: 116 EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVXADGNGTIDFP 295
E E +EAF LFD G I ++L LG+N T+ +LQ M++ A NG +
Sbjct: 9 EMDEEAEEAFDLFDVTHKGYIDFEDLRRSCAQLGENLTKEQLQLMLD--LAGTNGKVSRE 66
Query: 296 EF 301
EF
Sbjct: 67 EF 68
>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 41.1 bits (92), Expect = 1e-04
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 12/103 (11%)
Frame = +2
Query: 248 MINEVXADGNGTIDFPEFLTMMARKMXDTDSEEEIREAFRVFDKDGNGFISAAELRHV-- 421
+ N AD NG IDF EF+ ++ + +++ AF+++D D NG IS E+ +
Sbjct: 68 VFNVFDADKNGYIDFKEFICALSVTSRG-ELNDKLIWAFQLYDLDNNGLISYDEMLRIVD 126
Query: 422 ----MTNLGEKLTDEE------VDEMIREADIDGDGQVNYEEF 520
M KL ++E V+++ D + DGQ+ EEF
Sbjct: 127 AIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLEEF 169
Score = 31.1 bits (67), Expect = 0.15
Identities = 18/86 (20%), Positives = 39/86 (45%)
Frame = +2
Query: 275 NGTIDFPEFLTMMARKMXDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDE 454
+G ++ EF + + D F VFD D NG+I E ++ ++
Sbjct: 40 SGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGYIDFKEFICALSVTSRGELND 99
Query: 455 EVDEMIREADIDGDGQVNYEEFVTMM 532
++ + D+D +G ++Y+E + ++
Sbjct: 100 KLIWAFQLYDLDNNGLISYDEMLRIV 125
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 35.9 bits (79), Expect = 0.005
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +2
Query: 311 MARKMXDTDSEE--EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD 484
+ +K + +EE + + F D DG G++ + +K + +EV E IRE +
Sbjct: 6 LQKKYPELTNEEILTLTDQFNKLDVDGKGYLDQPTTIKAFED-SKKGSYDEVREAIREVN 64
Query: 485 IDGDGQVNYEEFV 523
+D G+V E+FV
Sbjct: 65 VDSSGRVEPEDFV 77
>SPBC11G11.02c |end3||actin cortical patch component End3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 375
Score = 35.5 bits (78), Expect = 0.007
Identities = 19/68 (27%), Positives = 39/68 (57%)
Frame = +2
Query: 329 DTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 508
D + + E FR + + NG++S ++ V+ + KL+ ++++++ ADID DG +
Sbjct: 2 DPQEKNKYWEIFRGLNPE-NGYLSGSKAAGVLRS--SKLSSDKLEKIWDLADIDDDGMFD 58
Query: 509 YEEFVTMM 532
++EF M
Sbjct: 59 FDEFAIAM 66
>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 31.1 bits (67), Expect = 0.15
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = -1
Query: 496 VAVDIGLANHLVDLLVSEFLSEVGHDVAQLGRGDEAVAVLVEDAE 362
V++ I L ++ L+ FLSE + +G+ DEA+ V+ ++AE
Sbjct: 180 VSIGINLLWGIITLVGVSFLSESPRYLVSIGKDDEAIQVMCKNAE 224
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 29.5 bits (63), Expect = 0.44
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -1
Query: 496 VAVDIGLANHLVDLLVSEFLSEVGHDVAQLGRGDEAVAVLVEDAEGLAD 350
V++ I L ++ ++ FL E + Q+G+ +EAV VL E AE D
Sbjct: 184 VSIGINLLWGIITMIGILFLPESPRYLIQVGKDEEAVRVLSESAELFPD 232
>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 409
Score = 28.7 bits (61), Expect = 0.77
Identities = 18/81 (22%), Positives = 35/81 (43%)
Frame = +2
Query: 233 AELQDMINEVXADGNGTIDFPEFLTMMARKMXDTDSEEEIREAFRVFDKDGNGFISAAEL 412
A +++ V + N ID E + K+ + ++ E V +DG+ I+ E
Sbjct: 318 ARYNELVQAVSSSSNSEIDEVEDAETIDSKILEKRNDLNNEEPNSVVAEDGSEIITLDEN 377
Query: 413 RHVMTNLGEKLTDEEVDEMIR 475
EKL D +++E ++
Sbjct: 378 DQSPNEATEKLRDNDLEESLK 398
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 28.3 bits (60), Expect = 1.0
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +2
Query: 101 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG--QNPTEAELQDMINEV 262
D+ E A + +S+FD+D +G IT +E+ +G + A L+D+ + +
Sbjct: 538 DETGEVDNATLEACYSIFDRDLNGDITCEEIELACVEIGKERKSISASLRDLNDSI 593
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 27.5 bits (58), Expect = 1.8
Identities = 19/85 (22%), Positives = 31/85 (36%)
Frame = +2
Query: 137 EAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVXADGNGTIDFPEFLTMMA 316
+ F FD+D DG + +EL + R P N + +G + + +L +
Sbjct: 311 DLFYQFDRDNDGALNNEELSALFRHTPGLPEIWVSSQFPNSTVLNEHGYVTYNGWLAQWS 370
Query: 317 RKMXDTDSEEEIREAFRVFDKDGNG 391
A+ FD DG G
Sbjct: 371 MITLFDYKTTLAYLAYLGFDTDGRG 395
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 419 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 517
V + E+ +EE DEM E D +G+G EE
Sbjct: 170 VQPDADEEEEEEEADEMEEEFDEEGEGDEEEEE 202
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Frame = +2
Query: 371 FDKDGNGFISAAELRH--------VMTNLGEKLTDEEVDEMIREAD 484
FD D NG ++ + L +TN +L+ EE+D M+ EA+
Sbjct: 476 FDVDANGILNVSALEKGTGKTQKITITNDKGRLSKEEIDRMVSEAE 521
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 26.6 bits (56), Expect = 3.1
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -3
Query: 245 LEVRLLWGSVLATSSRCPALWS*WCHR 165
LE++ WGS+ A + +W+ W R
Sbjct: 850 LEMKNYWGSISALCDKMSEIWADWVQR 876
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Frame = +2
Query: 371 FDKDGNGFISAAELRH--------VMTNLGEKLTDEEVDEMIREAD 484
FD D NG ++ + L +TN +L+ EE+D M+ EA+
Sbjct: 476 FDVDANGILNVSALEKGTGKTQKITITNDKGRLSKEEIDRMVAEAE 521
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 25.8 bits (54), Expect = 5.5
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +2
Query: 230 EAELQDMINEVXADGNGTIDFPEFLT--MMARKMXDTDSEEEIREAFRVFDKDGNGFISA 403
E L+ +N + + N ++D P FL MM + + EIR A FD G F
Sbjct: 281 ETLLRYRLNLIMSFQNPSVD-PGFLCLLMMIFALGSMFAHMEIRSASNPFDNPGKQFFDT 339
Query: 404 AEL 412
A L
Sbjct: 340 ARL 342
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 508 IDLAVAVDIGLANHLVDLLVSEFLSEVGHDVAQL 407
+D++V +D+ +H L S LS HDV Q+
Sbjct: 28 VDVSVDIDVIFPDHTQTLSFSLLLSNTIHDVRQV 61
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 173 TITTKELGTVMRSLGQ-NPTEAELQDMINEVXADGNGTIDFPEFLTMMARKMXDTDSEEE 349
T + GT+ S+G + E + ++++ T DFPE L+ +++ EE
Sbjct: 545 TTSLHPFGTLYESIGTIGDPKVEYKAILHDFSCH---TYDFPESLSHCVKRLPTPIPAEE 601
Query: 350 IREAFRVFDK 379
+++ + + DK
Sbjct: 602 LQKRYNLRDK 611
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,059,952
Number of Sequences: 5004
Number of extensions: 35582
Number of successful extensions: 141
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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