Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_N01
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    28   1.2  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    27   2.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.7  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    26   3.6  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    25   6.2  

>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 34/138 (24%), Positives = 51/138 (36%), Gaps = 4/138 (2%)
 Frame = +1

Query: 82   ATAAQRDPRAVFAKE*AS*RLESLRAGKTPSTVDLRYGAMAATTYM--PAEMELGNIGGY 255
            +TAA R PR V   + A+ +  S+ A K+         + A  T    PA          
Sbjct: 979  STAAARGPRPVVQNKPAATKPVSMPAAKSKPAPMANPVSTAQQTQNRPPAPAMQARPNTT 1038

Query: 256  HAASPRSAEPADMKYQHPLHSGGSPSPGA--PVIGNPWTSLPPADPWAMXXXXXXXXXPD 429
             AA+P ++    +K Q    S   P+P        +P     P+ P A          P 
Sbjct: 1039 QAAAPVTSTTTTIK-QATTVSASKPAPSTVTSAASSPSNISKPSAPVANNVSKPSAVPPP 1097

Query: 430  VKPPPAPHDHRHLQXAAH 483
              PPPA  + + L  A +
Sbjct: 1098 PPPPPAEVEKKDLYLALY 1115


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +3

Query: 297 VPASVALGRVAVPGGARDRE 356
           V A+ ALGR+AVPGGA   E
Sbjct: 102 VLAAKALGRLAVPGGALTSE 121


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 23/83 (27%), Positives = 30/83 (36%)
 Frame = +1

Query: 202  AATTYMPAEMELGNIGGYHAASPRSAEPADMKYQHPLHSGGSPSPGAPVIGNPWTSLPPA 381
            AA   +P  + + NI     +SP S  P D     PL    S SP AP+       +PP 
Sbjct: 964  AAPPSIPPPLPVSNI----LSSPTSEPPKDHPPSAPLSKPVSTSPAAPL-----ARVPPV 1014

Query: 382  DPWAMXXXXXXXXXPDVKPPPAP 450
               +           D  P P P
Sbjct: 1015 PKLSSKAPPVPLPSADAPPIPVP 1037


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 311 NGCWYFMSAGSALRGDAAWYPPMLPSSISA-GMYVVAAMAPYLRSTVD 171
           +G W  ++ GSA+R  A  Y     SSI+A  +Y  + +    RST D
Sbjct: 4   SGLWELITIGSAVRNVAKSYLKAEASSITAKQLYDASKITSSKRSTSD 51


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 166 SCRLEGSRAFNWLILS 119
           S RLEGS +FNW  LS
Sbjct: 311 SSRLEGSVSFNWASLS 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,214,349
Number of Sequences: 5004
Number of extensions: 42226
Number of successful extensions: 150
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)