Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_N01
(590 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 39 0.003
AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical ... 32 0.35
Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical pr... 31 0.46
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 31 0.61
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 31 0.81
AF078785-5|AAC27088.1| 192|Caenorhabditis elegans Hypothetical ... 31 0.81
AC026301-5|AAK68894.1| 745|Caenorhabditis elegans Hypothetical ... 30 1.4
Z35639-8|CAI46560.1| 634|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z35639-7|CAA84697.3| 959|Caenorhabditis elegans Hypothetical pr... 29 1.9
AY571963-1|AAS78587.1| 959|Caenorhabditis elegans ATX-2 protein. 29 1.9
AC024755-8|AAF59636.2| 604|Caenorhabditis elegans Hypothetical ... 29 1.9
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 29 2.5
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ... 29 2.5
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 2.5
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 2.5
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 2.5
Z81587-6|CAB04704.1| 417|Caenorhabditis elegans Hypothetical pr... 28 4.3
U53153-1|AAC69039.4| 715|Caenorhabditis elegans Hypothetical pr... 28 4.3
U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co... 23 4.7
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z83226-4|CAI79261.2| 206|Caenorhabditis elegans Hypothetical pr... 27 7.5
L23647-4|AAK29991.1| 233|Caenorhabditis elegans Hypothetical pr... 27 7.5
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 27 7.5
Z81106-2|CAB03220.2| 468|Caenorhabditis elegans Hypothetical pr... 27 10.0
Z73971-1|CAA98249.2| 929|Caenorhabditis elegans Hypothetical pr... 27 10.0
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 27 10.0
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 27 10.0
U40059-1|AAA81138.3| 867|Caenorhabditis elegans Hypothetical pr... 27 10.0
AF224743-1|AAF82248.1| 929|Caenorhabditis elegans leucine-rich ... 27 10.0
AF067617-1|ABQ13063.1| 379|Caenorhabditis elegans Uncoordinated... 27 10.0
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = +1
Query: 436 PPPAPHDHRHLQXAAHGWHAPVVSPHYGAGSPVTLHGGYQXPVHQH 573
PPP P+ H H AH H P+ G PV G+Q P QH
Sbjct: 70 PPPYPYQHPHQPPPAHPHHLQHPHPYAYPGYPVPGQEGHQVPAPQH 115
>AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical
protein Y40B1A.5 protein.
Length = 134
Score = 31.9 bits (69), Expect = 0.35
Identities = 17/46 (36%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Frame = +1
Query: 442 PAPHDHRHLQXAA-HGWHAPVVSPHYGAGSPVTLHGGYQXPVHQHH 576
P PH HLQ HG P PHY P GY Q H
Sbjct: 77 PPPHHQYHLQYPPPHGLGPPPPPPHYYTQPPPPPQSGYYHHQQQQH 122
>Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical
protein T04F8.8 protein.
Length = 165
Score = 31.5 bits (68), Expect = 0.46
Identities = 27/101 (26%), Positives = 34/101 (33%), Gaps = 3/101 (2%)
Frame = +1
Query: 238 GNIGGYHAASPRSAEPA-DMKYQHPLHSGGSPSPGAPVIGNPWTSLPPADPWAMXXXXXX 414
GN GG+ + + P D Y P GG G P P PP P
Sbjct: 56 GNGGGFGGNNYNNGPPPFDGGYNRPYGGGGGGGYGRPQGYVPPPPPPPTQP-EPEPEPRP 114
Query: 415 XXXPDVKPPPAPHDHRHLQXAAHGWHA--PVVSPHYGAGSP 531
P+ +P P P Q H A P+V P+ P
Sbjct: 115 EPQPEPQPEPQPEPQPEPQPEPHPEPAPEPIVKPYNSYAQP 155
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 31.1 bits (67), Expect = 0.61
Identities = 28/96 (29%), Positives = 36/96 (37%), Gaps = 5/96 (5%)
Frame = +1
Query: 259 AASPRSAEPADMKYQHPLHSGGSPSPGAPVIGNPWTSLP-PADPWAMXXXXXXXXXPDVK 435
A P+ A PA P P+P P+ P ++P PA P A P
Sbjct: 55 APYPQQAVPAPAPPPAPYPQHAVPAPAPPLASYPQNAVPVPAPPPA---PYPQHAVPAPA 111
Query: 436 PPPAPHDHRHLQXAAHGWH----APVVSPHYGAGSP 531
PPPAP+ +H A + P PHY P
Sbjct: 112 PPPAPYP-QHAVPAPAPYQQQPPPPPPPPHYPPPPP 146
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 30.7 bits (66), Expect = 0.81
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Frame = +1
Query: 445 APHDHRHLQXAAHGWHAPVVSPHYGAGSPVTLHGGYQXPVHQ---HH 576
AP H H + HG H+P H+G H G+ H HH
Sbjct: 435 APAHHGHHESHGHGHHSPAHHGHHGEHHHAPAHHGHHGEHHHAPAHH 481
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +1
Query: 457 HRHLQXAAHGWHAPVVSPHYGA-GSPVTLHGGYQXPVHQHH 576
H H + HG HAP H+G G HG H HH
Sbjct: 587 HGHHESHGHGHHAPAHHGHHGEHGVHHGHHGAGYGAHHGHH 627
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Frame = +1
Query: 451 HDHRHLQXAAHGWHAP--VVSPHYGA--GSPVTLHGG--YQXPVHQHH 576
H H H A HG H V H+GA G+ HG + P H+HH
Sbjct: 593 HGHGHHAPAHHGHHGEHGVHHGHHGAGYGAHHGHHGAHHHHAPHHEHH 640
>AF078785-5|AAC27088.1| 192|Caenorhabditis elegans Hypothetical
protein C04E12.2 protein.
Length = 192
Score = 30.7 bits (66), Expect = 0.81
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = -3
Query: 156 SKALEPSTGLFFRENCAGVALRCGSGGGHLTSPIRQRATCACVRY 22
S LE S +NC ALRCG G HL R R C + +
Sbjct: 61 SSLLEFSKSCIAMQNCLE-ALRCGQGTEHLAMYERMRGQCVTMHF 104
>AC026301-5|AAK68894.1| 745|Caenorhabditis elegans Hypothetical
protein Y54F10BM.3 protein.
Length = 745
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +2
Query: 38 HVARCRIGDVRWPPPLPQRSATPAQFSRKNKPVE 139
HV + V WP P P S TP S K P E
Sbjct: 141 HVEPYELSFVDWPTPAPPTSTTPPVSSTKPPPAE 174
>Z35639-8|CAI46560.1| 634|Caenorhabditis elegans Hypothetical
protein D2045.1b protein.
Length = 634
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = +1
Query: 424 PDVKPPPAPHDHRHLQXAAHGWHAPVVSPHYGAGSP 531
P PPP P +H Q HAP PH GA P
Sbjct: 463 PGAVPPPPPPQQQHQQQQHPPHHAP---PHVGAPPP 495
>Z35639-7|CAA84697.3| 959|Caenorhabditis elegans Hypothetical
protein D2045.1a protein.
Length = 959
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = +1
Query: 424 PDVKPPPAPHDHRHLQXAAHGWHAPVVSPHYGAGSP 531
P PPP P +H Q HAP PH GA P
Sbjct: 788 PGAVPPPPPPQQQHQQQQHPPHHAP---PHVGAPPP 820
>AY571963-1|AAS78587.1| 959|Caenorhabditis elegans ATX-2 protein.
Length = 959
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = +1
Query: 424 PDVKPPPAPHDHRHLQXAAHGWHAPVVSPHYGAGSP 531
P PPP P +H Q HAP PH GA P
Sbjct: 788 PGAVPPPPPPQQQHQQQQHPPHHAP---PHVGAPPP 820
>AC024755-8|AAF59636.2| 604|Caenorhabditis elegans Hypothetical
protein Y34B4A.8 protein.
Length = 604
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/69 (28%), Positives = 30/69 (43%)
Frame = +2
Query: 380 PTPGRCTSITHTHINQT*SLPRLLTTTATCSXRPTAGTRPSSARITVRARPSHCMEDTNX 559
P+P S+T +H + P + A C+ P + RP S I V ARP+ +
Sbjct: 489 PSPFNGGSLTRSHTEHRPNRPPPPSFRAACADTPKS--RPISYNIAVGARPNESHSVSQP 546
Query: 560 PCTNTICSE 586
P T+ E
Sbjct: 547 PKGMTVSME 555
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 29.1 bits (62), Expect = 2.5
Identities = 22/84 (26%), Positives = 27/84 (32%)
Frame = +1
Query: 325 SPSPGAPVIGNPWTSLPPADPWAMXXXXXXXXXPDVKPPPAPHDHRHLQXAAHGWHAPVV 504
SP P G P P+D P PP PH H + P
Sbjct: 59 SPPPAPRPSGQPPGPQGPSDLPGPSGAPPGPPHPS-GPPHRPHPHPSRRPRPTRLPRPSR 117
Query: 505 SPHYGAGSPVTLHGGYQXPVHQHH 576
SPH A P G++ +HH
Sbjct: 118 SPHSDAPEPSAATDGFELVFGKHH 141
>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
protein H11E01.3 protein.
Length = 1464
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +1
Query: 445 APHDHRHLQXAAHGWHAPVVSPHYGAGSPVTLHGGYQXPVHQHH 576
+PH H + H+PV S A SP ++H + +HH
Sbjct: 760 SPHVSEHFEHHEEAQHSPVASQEEAARSP-SVHSSHASEHFEHH 802
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +1
Query: 238 GNIGGYHAASPRSAEPADMKYQHPLHSGGSPSPGAPVIGNPWTSLPP 378
G GG +S+E + + P SP G+P G+P T PP
Sbjct: 381 GPRGGPRGGPRKSSEESSESREEPRGPRRSPPTGSPPTGSPPTGRPP 427
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 247 GGYHAASPRSAEPADMKYQHPLHSGGSPSPGAPVIGNPWTSLPP 378
G H P +E ++ + + P SP G+P G+P T PP
Sbjct: 465 GRPHRGGPGKSESSESR-EGPRGPRRSPPTGSPPTGSPPTGAPP 507
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +1
Query: 238 GNIGGYHAASPRSAEPADMKYQHPLHSGGSPSPGAPVIGNPWTSLPP 378
G GG +S+E + + P SP G+P G+P T PP
Sbjct: 402 GPRGGPRGGPRKSSEESSESREEPRGPRRSPPTGSPPTGSPPTGRPP 448
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 247 GGYHAASPRSAEPADMKYQHPLHSGGSPSPGAPVIGNPWTSLPP 378
G H P +E ++ + + P SP G+P G+P T PP
Sbjct: 486 GRPHRGGPGKSESSESR-EGPRGPRRSPPTGSPPTGSPPTGAPP 528
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +1
Query: 238 GNIGGYHAASPRSAEPADMKYQHPLHSGGSPSPGAPVIGNPWTSLPP 378
G GG +S+E + + P SP G+P G+P T PP
Sbjct: 387 GPRGGPRGGPRKSSEESSESREEPRGPRRSPPTGSPPTGSPPTGRPP 433
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 247 GGYHAASPRSAEPADMKYQHPLHSGGSPSPGAPVIGNPWTSLPP 378
G H P +E ++ + + P SP G+P G+P T PP
Sbjct: 471 GRPHRGGPGKSESSESR-EGPRGPRRSPPTGSPPTGSPPTGAPP 513
>Z81587-6|CAB04704.1| 417|Caenorhabditis elegans Hypothetical
protein T06G6.8 protein.
Length = 417
Score = 28.3 bits (60), Expect = 4.3
Identities = 19/44 (43%), Positives = 21/44 (47%)
Frame = +2
Query: 377 PPTPGRCTSITHTHINQT*SLPRLLTTTATCSXRPTAGTRPSSA 508
P P R S+T T T LP TTT+T P A T PS A
Sbjct: 237 PTKPSRTRSLTSTSTT-TAKLP---TTTSTTFAAPQASTEPSEA 276
>U53153-1|AAC69039.4| 715|Caenorhabditis elegans Hypothetical
protein T19A5.3a protein.
Length = 715
Score = 28.3 bits (60), Expect = 4.3
Identities = 23/66 (34%), Positives = 27/66 (40%)
Frame = +1
Query: 157 AGKTPSTVDLRYGAMAATTYMPAEMELGNIGGYHAASPRSAEPADMKYQHPLHSGGSPSP 336
A PS D +G A P E E G A S RS P Y P+ GG+P P
Sbjct: 513 APSPPSGPDPDFGGDTAAAG-PTEEEF--FTGESALS-RSKGPTGDGYGPPVFPGGAPPP 568
Query: 337 GAPVIG 354
P +G
Sbjct: 569 PVPAVG 574
>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore
complex protein protein7 protein.
Length = 1217
Score = 23.4 bits (48), Expect(2) = 4.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 157 AGKTPSTVDLRYGAMAATT 213
A TPSTV +G+ A+TT
Sbjct: 590 ASNTPSTVKFGFGSGASTT 608
Score = 23.0 bits (47), Expect(2) = 4.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 322 GSPSPGAPVIGNPWTSLPP 378
GS S AP+ G P T+ PP
Sbjct: 622 GSGSSVAPLFGAPKTTAPP 640
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 27.9 bits (59), Expect = 5.7
Identities = 20/69 (28%), Positives = 28/69 (40%)
Frame = +2
Query: 383 TPGRCTSITHTHINQT*SLPRLLTTTATCSXRPTAGTRPSSARITVRARPSHCMEDTNXP 562
T T+ T T QT + P TTT T + PT T P++ T + S
Sbjct: 250 TTSETTTTTPTTTTQTTTKPT--TTTTTPTTTPTTTTTPTTTTTTAKTTKSTTTTTKTTK 307
Query: 563 CTNTICSET 589
T+T + T
Sbjct: 308 TTSTPTTTT 316
>Z83226-4|CAI79261.2| 206|Caenorhabditis elegans Hypothetical
protein F43D2.6 protein.
Length = 206
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/48 (29%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Frame = -1
Query: 314 CNGCWYFMSAG----SALRGDAAWYPPMLPSSISAGMYVVAAMAPYLR 183
CNGCW ++ D WYP I G V + P R
Sbjct: 112 CNGCWLHRRRNPQQYESVHNDNGWYPICCGFGIPMGTVVFSTHPPQYR 159
>L23647-4|AAK29991.1| 233|Caenorhabditis elegans Hypothetical
protein ZC262.2a protein.
Length = 233
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +3
Query: 138 KAREPSSRQDAVHRGSEIRRHGGDHVHARRDGARQHRRVPR 260
K RE S ++D +E RRH RRD R RR R
Sbjct: 44 KERERSPKRDRHPEKNESRRHDDRDQERRRDYGRNDRRDDR 84
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 27.5 bits (58), Expect = 7.5
Identities = 19/62 (30%), Positives = 22/62 (35%)
Frame = +1
Query: 265 SPRSAEPADMKYQHPLHSGGSPSPGAPVIGNPWTSLPPADPWAMXXXXXXXXXPDVKPPP 444
+P P K Q S P P P P +S+PP P A P PPP
Sbjct: 510 TPPPPAPGPHKEQRRSTSKDPPRPAPP----PVSSIPPPPPIAGLLAANGTNVPIPPPPP 565
Query: 445 AP 450
P
Sbjct: 566 PP 567
>Z81106-2|CAB03220.2| 468|Caenorhabditis elegans Hypothetical
protein R06C1.3 protein.
Length = 468
Score = 27.1 bits (57), Expect = 10.0
Identities = 16/65 (24%), Positives = 24/65 (36%)
Frame = +1
Query: 256 HAASPRSAEPADMKYQHPLHSGGSPSPGAPVIGNPWTSLPPADPWAMXXXXXXXXXPDVK 435
H ++ P+ + P + GSP+ P P +L P M D+
Sbjct: 261 HHHPQQNVHPSQQRGGAPAAARGSPNVKRPTEAPPPVNLDHLPPPDMSILSIDDDDDDLP 320
Query: 436 PPPAP 450
PPP P
Sbjct: 321 PPPPP 325
>Z73971-1|CAA98249.2| 929|Caenorhabditis elegans Hypothetical
protein C50H2.1 protein.
Length = 929
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 415 RVRDAGASPRGRRVAVTSKGSLSRAPPGT 329
R RD SP G +AVT SL+ P G+
Sbjct: 738 RSRDEPTSPSGMHLAVTQTTSLNSTPRGS 766
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 27.1 bits (57), Expect = 10.0
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +2
Query: 377 PPTPGRCTSITHTHINQT*SLPRLLTTTATCSXRPTAGTRPSSARIT 517
P T T +T T T + P TTT T S T+ T PS++ +T
Sbjct: 407 PSTSTTTTEVTSTSSTVTTTEP---TTTLTTSTASTSTTEPSTSTVT 450
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 27.1 bits (57), Expect = 10.0
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +2
Query: 377 PPTPGRCTSITHTHINQT*SLPRLLTTTATCSXRPTAGTRPSSARIT 517
P T T +T T T + P TTT T S T+ T PS++ +T
Sbjct: 407 PSTSTTTTEVTSTSSTVTTTEP---TTTLTTSTASTSTTEPSTSTVT 450
>U40059-1|AAA81138.3| 867|Caenorhabditis elegans Hypothetical
protein K03C7.1 protein.
Length = 867
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +2
Query: 74 PPPLPQRSATPAQFSRK-NKPVEGSRAFEPARRRPPW 181
P P + P + ++ KP E S+ P + RPPW
Sbjct: 31 PAKKPSETPKPKEVPKELPKPAEPSKPAAPKKWRPPW 67
>AF224743-1|AAF82248.1| 929|Caenorhabditis elegans leucine-rich
repeat-containingG protein-coupled receptor protein.
Length = 929
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 415 RVRDAGASPRGRRVAVTSKGSLSRAPPGT 329
R RD SP G +AVT SL+ P G+
Sbjct: 738 RSRDEPTSPSGMHLAVTQTTSLNSTPRGS 766
>AF067617-1|ABQ13063.1| 379|Caenorhabditis elegans Uncoordinated
protein 57, isoform c protein.
Length = 379
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 415 RVRDAGASPRGRRVAVTSKGSLSRAPPGTATRPSATD 305
R++DA A PR V ++ + SR P + P+ +D
Sbjct: 241 RIKDAAARPREEHVPLSVLANESRTPRSSFRSPAPSD 277
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,392,902
Number of Sequences: 27780
Number of extensions: 292641
Number of successful extensions: 1295
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1287
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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