Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_M22
         (383 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc...    49   3e-07
SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S...    41   8e-05
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   0.58 
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    26   1.8  
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa...    26   2.3  
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    25   5.4  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    24   9.4  

>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 74

 Score = 48.8 bits (111), Expect = 3e-07
 Identities = 27/57 (47%), Positives = 37/57 (64%)
 Frame = +2

Query: 113 RRKDAKSRQNKRRTLQNVKFKASTAQGFPATPWLITDKEKAEKLKQSLPPGLQVKEV 283
           RRKDA S + K+ T ++VKFK   ++       ++ D +KAEKL+QSLPP L V EV
Sbjct: 16  RRKDATSARIKKNTNKDVKFKLRCSKYLYTL--VVADAKKAEKLRQSLPPDLTVTEV 70


>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 74

 Score = 40.7 bits (91), Expect = 8e-05
 Identities = 24/56 (42%), Positives = 33/56 (58%)
 Frame = +2

Query: 116 RKDAKSRQNKRRTLQNVKFKASTAQGFPATPWLITDKEKAEKLKQSLPPGLQVKEV 283
           R DA S + K+   + VKFK   ++       ++ D +KAEKL+QSLPP L V EV
Sbjct: 17  RGDATSARVKKNQNKAVKFKLRCSRYLYTL--VVADAKKAEKLRQSLPPALTVTEV 70


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 27.9 bits (59), Expect = 0.58
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 113 RRKDAKSRQNKRRTLQNVKFKASTAQGFPATPWLITDKEKAEKLKQSLPP 262
           R  D +  +N+R      +  +S A+     P   +  +KAE++ +SLPP
Sbjct: 183 RVSDIRQMENRRELNVKRRSVSSPAEDLAIRPLSFSRYKKAEEIPESLPP 232


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 17/64 (26%), Positives = 26/64 (40%)
 Frame = +2

Query: 62  RAETQHDINTTF*LNGRRRKDAKSRQNKRRTLQNVKFKASTAQGFPATPWLITDKEKAEK 241
           + ET+ +        G+R  D          L + +    T++   AT   + DK K EK
Sbjct: 690 KRETEENAKRKAEEEGKREADKNPEIKSSAPLASSEANVDTSKQTNATEPEVVDKTKVEK 749

Query: 242 LKQS 253
           LK S
Sbjct: 750 LKAS 753


>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 36  KTIPSSTLPALKLNTISTRLFNLTADGGKTPNXV 137
           +T P+ T+P  + +T+S    +LT +  K PN V
Sbjct: 154 ETNPTVTIPVKRPSTLSKLPESLTENNAKVPNVV 187


>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 104 NGRRRKDAKSRQNKRRTLQNVKFK 175
           N R +K   SR+NK+  L+N K K
Sbjct: 194 NARNQKGNSSRKNKKAPLENHKEK 217


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 137  QNKRRTLQNVKFKASTAQGFPATPWLITDKEKAEKLKQSLPPGLQ 271
            QNK +++ N KFK  +     A   L    E+ E+LK  +  GLQ
Sbjct: 924  QNKEKSVNNEKFKEVSQALAEANEKLNARDEEIERLKVDI-IGLQ 967


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,094,301
Number of Sequences: 5004
Number of extensions: 16988
Number of successful extensions: 36
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)