Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_M22
(383 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81463-5|CAB03853.1| 70|Caenorhabditis elegans Hypothetical pr... 58 2e-09
AF016676-9|AAG24107.1| 394|Caenorhabditis elegans Hypothetical ... 28 2.6
U43375-5|AAA83622.1| 1035|Caenorhabditis elegans Hypothetical pr... 27 6.0
AF016676-8|AAG24105.1| 502|Caenorhabditis elegans Hypothetical ... 27 6.0
Z50795-4|CAA90666.1| 529|Caenorhabditis elegans Hypothetical pr... 26 7.9
U28742-3|AAA68333.3| 837|Caenorhabditis elegans Hypothetical pr... 26 7.9
DQ407523-1|ABD85015.1| 856|Caenorhabditis elegans OGA-1c protein. 26 7.9
DQ407522-1|ABD85014.1| 854|Caenorhabditis elegans OGA-1b protein. 26 7.9
DQ407521-1|ABD85013.1| 870|Caenorhabditis elegans OGA-1d protein. 26 7.9
>Z81463-5|CAB03853.1| 70|Caenorhabditis elegans Hypothetical
protein C06B8.8 protein.
Length = 70
Score = 58.4 bits (135), Expect = 2e-09
Identities = 32/58 (55%), Positives = 40/58 (68%)
Frame = +2
Query: 113 RRKDAKSRQNKRRTLQNVKFKASTAQGFPATPWLITDKEKAEKLKQSLPPGLQVKEVK 286
RRKDAKS + K+ + N KFK A ++ DK+KAEKLKQSLPPG+QVKE+K
Sbjct: 16 RRKDAKSVKIKKNS-NNTKFKVRCASYLYTL--VVADKDKAEKLKQSLPPGIQVKELK 70
>AF016676-9|AAG24107.1| 394|Caenorhabditis elegans Hypothetical
protein F41B5.10 protein.
Length = 394
Score = 27.9 bits (59), Expect = 2.6
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 20 TAAWLENYSVFNTARAETQHDI-NTTF*LNGRRRKDAKSRQNKRRTL 157
T WL N++ FN + Q I T + + GR K AK+ + +R+ L
Sbjct: 191 TTDWLTNFNEFNVLPLDVQLKIVKTIWQVYGRFEKIAKTAELRRKKL 237
>U43375-5|AAA83622.1| 1035|Caenorhabditis elegans Hypothetical
protein K09C4.10 protein.
Length = 1035
Score = 26.6 bits (56), Expect = 6.0
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +2
Query: 104 NGRRRKDAKSRQ-NKRRTLQNVKFKASTAQGFPATPWLITDKEKAEKLKQSLPPGLQVKE 280
NG K AK ++ ++ TL K+ + FP+TP +K + S P +K+
Sbjct: 595 NGDSLKSAKKKKASEFTTLDANKYNIEKEKDFPSTPAEEYSASSTDKEEVSKPTKTSIKK 654
Query: 281 VK 286
K
Sbjct: 655 AK 656
>AF016676-8|AAG24105.1| 502|Caenorhabditis elegans Hypothetical
protein F41B5.9 protein.
Length = 502
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 20 TAAWLENYSVFNTARAETQHD-INTTF*LNGRRRKDAKSRQNKRRTL 157
TA WL N+ FN+ Q + I + + GR K A++ + +R+ L
Sbjct: 227 TAEWLTNFQEFNSLPTNVQLEVIKSIWQTYGRFEKLARTAEFRRKKL 273
>Z50795-4|CAA90666.1| 529|Caenorhabditis elegans Hypothetical
protein R166.4 protein.
Length = 529
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/62 (22%), Positives = 27/62 (43%)
Frame = +2
Query: 101 LNGRRRKDAKSRQNKRRTLQNVKFKASTAQGFPATPWLITDKEKAEKLKQSLPPGLQVKE 280
+ +RRK K + R+ + F+A+ + P +I D+E+ Q L+ +
Sbjct: 447 VGNQRRKSGKKNKKNRKNQKKNDFEAAVIEKKQVEPIVIDDEEEVNSSLQKKFDALKAEN 506
Query: 281 VK 286
K
Sbjct: 507 EK 508
>U28742-3|AAA68333.3| 837|Caenorhabditis elegans Hypothetical
protein T20B5.3 protein.
Length = 837
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +2
Query: 140 NKRRTLQNVKFKASTAQGFPATPWLITDKEKAEKLKQSLPPGL 268
++R+ +QN K+ +GF PW T +++ K+ GL
Sbjct: 8 DRRKAVQNSKYICGVVEGFYGRPW--TPEQRKHLFKRQNQLGL 48
>DQ407523-1|ABD85015.1| 856|Caenorhabditis elegans OGA-1c protein.
Length = 856
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +2
Query: 140 NKRRTLQNVKFKASTAQGFPATPWLITDKEKAEKLKQSLPPGL 268
++R+ +QN K+ +GF PW T +++ K+ GL
Sbjct: 8 DRRKAVQNSKYICGVVEGFYGRPW--TPEQRKHLFKRQNQLGL 48
>DQ407522-1|ABD85014.1| 854|Caenorhabditis elegans OGA-1b protein.
Length = 854
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +2
Query: 140 NKRRTLQNVKFKASTAQGFPATPWLITDKEKAEKLKQSLPPGL 268
++R+ +QN K+ +GF PW T +++ K+ GL
Sbjct: 8 DRRKAVQNSKYICGVVEGFYGRPW--TPEQRKHLFKRQNQLGL 48
>DQ407521-1|ABD85013.1| 870|Caenorhabditis elegans OGA-1d protein.
Length = 870
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +2
Query: 140 NKRRTLQNVKFKASTAQGFPATPWLITDKEKAEKLKQSLPPGL 268
++R+ +QN K+ +GF PW T +++ K+ GL
Sbjct: 8 DRRKAVQNSKYICGVVEGFYGRPW--TPEQRKHLFKRQNQLGL 48
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,066,755
Number of Sequences: 27780
Number of extensions: 97824
Number of successful extensions: 241
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -