Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_M17
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc...    74   1e-14
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc...    72   4e-14
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    27   1.4  
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    26   2.5  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    26   2.5  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    25   5.8  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   7.7  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    25   7.7  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    25   7.7  

>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 88

 Score = 73.7 bits (173), Expect = 1e-14
 Identities = 34/73 (46%), Positives = 52/73 (71%)
 Frame = +2

Query: 131 VRDKLNNQVLFDKPTYXKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQ 310
           V+DK  +  +FDK    ++ KEVP +K I+ +V+ +R+K+ GSLAR A+ +L E+G+I++
Sbjct: 12  VKDKAQHATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQK 71

Query: 311 VVQHHGQVIYTRA 349
           V QH  Q IYTRA
Sbjct: 72  VDQHSKQAIYTRA 84


>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 72.1 bits (169), Expect = 4e-14
 Identities = 33/72 (45%), Positives = 51/72 (70%)
 Frame = +2

Query: 131 VRDKLNNQVLFDKPTYXKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQ 310
           V+DK  +  +FDK    ++ KEVP +K I+ +V+ +R+K+ GSLAR A+ +L E+G+I++
Sbjct: 12  VKDKAQHATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQK 71

Query: 311 VVQHHGQVIYTR 346
           V QH  Q IYTR
Sbjct: 72  VDQHSKQAIYTR 83


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 60  KKHRXXRKDPVAAKPRRRSGPKEKFVTS*TTRC 158
           K HR    DP+   P RR GP  + V +   +C
Sbjct: 203 KVHRPNHFDPLVKLPTRRRGPGRRPVVALAMKC 235


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -1

Query: 179 HMWVYQTTPGCSTCHELFLWTTSSSWLCRHRILP 78
           +M  YQ TP     HE   WT SS  L  H + P
Sbjct: 152 YMRAYQLTPEFMAAHEEKTWTASS--LNSHNLTP 183


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 322 MLDYLFDETFFPKLDECSSR 263
           M D LF E+F  +LD C  R
Sbjct: 682 MADELFSESFLSRLDNCEKR 701


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -3

Query: 285  SSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSXSYVGLSNNT--WLFNLSRTFP 124
            S+ S  L+ EP+TF+ S T +  IS     SL       LS++T   L + S T P
Sbjct: 946  SASSNTLSTEPKTFSSSSTLSESISSINTNSLTVKPESSLSSSTTSGLTSSSSTIP 1001


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 186  SXSYVGLSNNTWLFNLSRTFPLDHFFFLALPPP 88
            S  Y  L NN++L  +S +   ++ F++  PPP
Sbjct: 1008 SFIYGSLQNNSFLSRVSPSSLEENVFYIQHPPP 1040


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 381 IVYATGSSPLVARV*ITCP*CWTTCLMRP 295
           I+Y T ++P++  + +T   CW   L  P
Sbjct: 260 ILYKTNNNPIILPITVTVCSCWWLILSTP 288


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +2

Query: 233 SERLKVRGSLARRALIELREKGLIKQVVQHHGQVIY 340
           +ERL +  ++ R AL+EL++  LIKQ      QV++
Sbjct: 185 NERLNL-DTIKRNALVELKKLRLIKQQESLRHQVMH 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,584,235
Number of Sequences: 5004
Number of extensions: 29719
Number of successful extensions: 97
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)