Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_M17
         (470 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071076-1|AAL48698.1|  117|Drosophila melanogaster RE14595p pro...   169   2e-42
AE014297-1258|AAF54605.2|  117|Drosophila melanogaster CG6684-PB...   169   2e-42
AE014297-1257|AAN13495.1|  117|Drosophila melanogaster CG6684-PA...   169   2e-42
U03289-1|AAA03464.1|  113|Drosophila melanogaster protein ( Dros...   164   6e-41
AY052101-1|AAK93525.1|  607|Drosophila melanogaster SD04973p pro...    29   4.2  
AE013599-3005|AAF57474.1|  567|Drosophila melanogaster CG8929-PC...    29   4.2  
AE013599-3004|AAF57475.2|  607|Drosophila melanogaster CG8929-PB...    29   4.2  
AE013599-3003|AAF57473.2|  607|Drosophila melanogaster CG8929-PA...    29   4.2  
AY071361-1|AAL48983.1|  521|Drosophila melanogaster RE39556p pro...    27   9.7  
AE014297-1601|AAF54879.2|  521|Drosophila melanogaster CG7091-PA...    27   9.7  

>AY071076-1|AAL48698.1|  117|Drosophila melanogaster RE14595p
           protein.
          Length = 117

 Score =  169 bits (410), Expect = 2e-42
 Identities = 84/114 (73%), Positives = 90/114 (78%)
 Frame = +2

Query: 23  PTQDAKASAKQPQKTQXXXEXXXXXXXXXXXXXXXXVRDKLNNQVLFDKPTYXKLYKEVP 202
           P +DAK+SAKQPQKTQ   E                VRDKLNNQVLFDK TY KLYKEVP
Sbjct: 3   PKKDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKEVP 62

Query: 203 QYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 364
            YKLITP+VVSERLK+RGSLA+RALIELREKGLIKQVVQHH QVIYTRATKGD+
Sbjct: 63  AYKLITPSVVSERLKIRGSLAKRALIELREKGLIKQVVQHHSQVIYTRATKGDE 116


>AE014297-1258|AAF54605.2|  117|Drosophila melanogaster CG6684-PB,
           isoform B protein.
          Length = 117

 Score =  169 bits (410), Expect = 2e-42
 Identities = 84/114 (73%), Positives = 90/114 (78%)
 Frame = +2

Query: 23  PTQDAKASAKQPQKTQXXXEXXXXXXXXXXXXXXXXVRDKLNNQVLFDKPTYXKLYKEVP 202
           P +DAK+SAKQPQKTQ   E                VRDKLNNQVLFDK TY KLYKEVP
Sbjct: 3   PKKDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKEVP 62

Query: 203 QYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 364
            YKLITP+VVSERLK+RGSLA+RALIELREKGLIKQVVQHH QVIYTRATKGD+
Sbjct: 63  AYKLITPSVVSERLKIRGSLAKRALIELREKGLIKQVVQHHSQVIYTRATKGDE 116


>AE014297-1257|AAN13495.1|  117|Drosophila melanogaster CG6684-PA,
           isoform A protein.
          Length = 117

 Score =  169 bits (410), Expect = 2e-42
 Identities = 84/114 (73%), Positives = 90/114 (78%)
 Frame = +2

Query: 23  PTQDAKASAKQPQKTQXXXEXXXXXXXXXXXXXXXXVRDKLNNQVLFDKPTYXKLYKEVP 202
           P +DAK+SAKQPQKTQ   E                VRDKLNNQVLFDK TY KLYKEVP
Sbjct: 3   PKKDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKEVP 62

Query: 203 QYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 364
            YKLITP+VVSERLK+RGSLA+RALIELREKGLIKQVVQHH QVIYTRATKGD+
Sbjct: 63  AYKLITPSVVSERLKIRGSLAKRALIELREKGLIKQVVQHHSQVIYTRATKGDE 116


>U03289-1|AAA03464.1|  113|Drosophila melanogaster protein (
           Drosophila melanogasterSevelin ribosomal protein homolog
           gene, partial cds. ).
          Length = 113

 Score =  164 bits (398), Expect = 6e-41
 Identities = 82/112 (73%), Positives = 88/112 (78%)
 Frame = +2

Query: 29  QDAKASAKQPQKTQXXXEXXXXXXXXXXXXXXXXVRDKLNNQVLFDKPTYXKLYKEVPQY 208
           +DAK+SAKQPQKTQ   E                VRDKLNNQVLFDK TY KLYKEVP Y
Sbjct: 1   KDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKEVPAY 60

Query: 209 KLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 364
           KLITP+VVSERLK+RGSL +RALIELREKGLIKQVVQHH QVIYTRATKGD+
Sbjct: 61  KLITPSVVSERLKIRGSLDKRALIELREKGLIKQVVQHHSQVIYTRATKGDE 112


>AY052101-1|AAK93525.1|  607|Drosophila melanogaster SD04973p
           protein.
          Length = 607

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 18  PAQLRTRRLRPNSLKKHRXXRKDPVAAKPRRRSGP 122
           P+Q   R   P+S  + R  +  P++  PRRRS P
Sbjct: 118 PSQRYGRSRSPHSRSRSRLRKSPPLSPPPRRRSPP 152


>AE013599-3005|AAF57474.1|  567|Drosophila melanogaster CG8929-PC,
           isoform C protein.
          Length = 567

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 18  PAQLRTRRLRPNSLKKHRXXRKDPVAAKPRRRSGP 122
           P+Q   R   P+S  + R  +  P++  PRRRS P
Sbjct: 78  PSQRYGRSRSPHSRSRSRLRKSPPLSPPPRRRSPP 112


>AE013599-3004|AAF57475.2|  607|Drosophila melanogaster CG8929-PB,
           isoform B protein.
          Length = 607

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 18  PAQLRTRRLRPNSLKKHRXXRKDPVAAKPRRRSGP 122
           P+Q   R   P+S  + R  +  P++  PRRRS P
Sbjct: 118 PSQRYGRSRSPHSRSRSRLRKSPPLSPPPRRRSPP 152


>AE013599-3003|AAF57473.2|  607|Drosophila melanogaster CG8929-PA,
           isoform A protein.
          Length = 607

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 18  PAQLRTRRLRPNSLKKHRXXRKDPVAAKPRRRSGP 122
           P+Q   R   P+S  + R  +  P++  PRRRS P
Sbjct: 118 PSQRYGRSRSPHSRSRSRLRKSPPLSPPPRRRSPP 152


>AY071361-1|AAL48983.1|  521|Drosophila melanogaster RE39556p
           protein.
          Length = 521

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 321 CWTTCLMRPFSLSSMSALLAR 259
           CW  CL+  +++SSMS  L R
Sbjct: 2   CWRLCLLHRYAMSSMSWTLPR 22


>AE014297-1601|AAF54879.2|  521|Drosophila melanogaster CG7091-PA
           protein.
          Length = 521

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 321 CWTTCLMRPFSLSSMSALLAR 259
           CW  CL+  +++SSMS  L R
Sbjct: 2   CWRLCLLHRYAMSSMSWTLPR 22


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,976,379
Number of Sequences: 53049
Number of extensions: 352662
Number of successful extensions: 868
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1601407269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)