Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_M16
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 194 7e-50
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 191 4e-49
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 190 6e-49
01_01_0891 + 7023383-7023700,7024627-7024705,7024888-7024951,702... 29 2.4
07_03_0473 - 18525712-18525858,18526049-18526162,18526442-185265... 29 3.2
05_03_0415 - 13661745-13664240,13664376-13664401,13665018-136650... 29 4.3
12_02_0776 - 23064167-23064239,23065214-23065518,23065614-230657... 28 5.6
06_03_0290 - 19193707-19193752,19193822-19194090 28 5.6
04_03_0983 + 21423086-21423280,21423330-21423404,21423531-214236... 28 7.5
04_01_0596 - 7852529-7855185,7855545-7855581 28 7.5
02_05_1331 + 35736543-35736638,35737407-35737525,35737670-357377... 27 9.9
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 194 bits (472), Expect = 7e-50
Identities = 95/155 (61%), Positives = 120/155 (77%)
Frame = +3
Query: 189 RATKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDK 368
+ TKIASEGLK RVFEVSLADLQ D D +++RK RL AE VQG+NVL NF GM TTDK
Sbjct: 52 QGTKIASEGLKHRVFEVSLADLQNDED--QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDK 109
Query: 369 LRWMVKKWQTLIEANIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMC 548
LR +VKKWQTLIEA++DV TTDGY+LR+FCIGFT + ++TCYAQ +Q+R IR+KM
Sbjct: 110 LRSLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMV 169
Query: 549 EIITRDVTNSELREVVNKLIPDSIAKDIEKACHGI 653
EI+ ++ +L+E+V+K IP+ I K+IEKA I
Sbjct: 170 EIMANQASSCDLKELVSKFIPEVIGKEIEKATSSI 204
Score = 35.9 bits (79), Expect = 0.028
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1
Query: 94 VDPFTRKDWYDVKAP 138
VDPF +KDWYD+KAP
Sbjct: 21 VDPFAKKDWYDIKAP 35
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +2
Query: 140 SMFSKRQVGTTLVNRTQGNE 199
S+F+ R +G TLV+RTQG +
Sbjct: 36 SVFNVRNIGKTLVSRTQGTK 55
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 191 bits (466), Expect = 4e-49
Identities = 94/155 (60%), Positives = 119/155 (76%)
Frame = +3
Query: 189 RATKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDK 368
+ TKIASEGLK RVFEVSLADLQ D D +++RK RL AE VQG+NVL NF GM TTDK
Sbjct: 52 QGTKIASEGLKHRVFEVSLADLQNDED--QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDK 109
Query: 369 LRWMVKKWQTLIEANIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMC 548
LR +VKKWQTLIEA++DV TTD Y+LR+FCIGFT + ++TCYAQ +Q+R IR+KM
Sbjct: 110 LRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMV 169
Query: 549 EIITRDVTNSELREVVNKLIPDSIAKDIEKACHGI 653
EI+ ++ +L+E+V+K IP+ I K+IEKA I
Sbjct: 170 EIMVNQASSCDLKELVSKFIPEVIGKEIEKATSSI 204
Score = 35.9 bits (79), Expect = 0.028
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1
Query: 94 VDPFTRKDWYDVKAP 138
VDPF +KDWYD+KAP
Sbjct: 21 VDPFAKKDWYDIKAP 35
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +2
Query: 140 SMFSKRQVGTTLVNRTQGNE 199
S+F+ R VG TLV+RTQG +
Sbjct: 36 SVFNVRNVGKTLVSRTQGTK 55
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 190 bits (464), Expect = 6e-49
Identities = 94/155 (60%), Positives = 118/155 (76%)
Frame = +3
Query: 189 RATKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDK 368
+ TKIASEGLK RVFEVSLADLQ D D +++RK RL AE VQGRNVL NF GM TTDK
Sbjct: 52 QGTKIASEGLKHRVFEVSLADLQNDED--QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDK 109
Query: 369 LRWMVKKWQTLIEANIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMC 548
LR +VKKWQTLIEA++DV TTD Y+LR+FCIGFT + ++TCYAQ +Q+R IR+KM
Sbjct: 110 LRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMV 169
Query: 549 EIITRDVTNSELREVVNKLIPDSIAKDIEKACHGI 653
EI+ + +L+E+V+K IP+ I K+IEK+ I
Sbjct: 170 EIMANQASTCDLKELVSKFIPEVIGKEIEKSTSSI 204
Score = 36.3 bits (80), Expect = 0.021
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = +1
Query: 94 VDPFTRKDWYDVKAP 138
VDPF++KDWYD+KAP
Sbjct: 21 VDPFSKKDWYDIKAP 35
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +2
Query: 140 SMFSKRQVGTTLVNRTQGNE 199
++FS R +G TLV+RTQG +
Sbjct: 36 TVFSVRNIGKTLVSRTQGTK 55
>01_01_0891 +
7023383-7023700,7024627-7024705,7024888-7024951,
7025324-7025401,7025513-7025708,7025895-7025963,
7026115-7026254,7026425-7026547,7027390-7027582,
7028872-7029034,7029433-7029476,7029683-7029724
Length = 502
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = +3
Query: 57 VEGR*KRC*EEDCRPIHSQRLVRCQGSALCSARGKSAPRLSTVPRATKIASEGLKGRVFE 236
V GR +R E RP H L+RC+ + G S P T A KG +++
Sbjct: 11 VHGRLRRSPELHARPYHRPSLLRCRAFKQEADNGGEEASSSPPPPTTAEARRRRKGPLYK 70
Query: 237 VSLA 248
+ A
Sbjct: 71 LKAA 74
>07_03_0473 -
18525712-18525858,18526049-18526162,18526442-18526522,
18526787-18526865,18526902-18526996,18527092-18527170,
18527339-18527450,18527682-18527770,18527868-18527938,
18528846-18528962
Length = 327
Score = 29.1 bits (62), Expect = 3.2
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Frame = -1
Query: 276 FPRQCQLVDQPGKLRK---LFPSILPKQFSLPWVRLTSVVPTCLLLNIERSLDIVPIFAS 106
F +QC L+ + + L + LP FS W++L + + L + I + + VP+ +
Sbjct: 180 FTKQCNLIIYYAMIEQYDNLAQNSLPYNFS--WIKLKAPLVVALAIKIHQFVASVPVLKA 237
Query: 105 EWVDNLLLNTFFTALRQAFI 46
NL+L+ F+ RQ I
Sbjct: 238 ----NLVLSCTFSCNRQVSI 253
>05_03_0415 -
13661745-13664240,13664376-13664401,13665018-13665035,
13665914-13666181,13666531-13666598,13667102-13667243
Length = 1005
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -3
Query: 280 DLSASVSACRSARETSKTLPFNPSEAIFVALGTVDKRGADLPLAEH 143
DL A A +T K +P P+ ++VAL + + +++ LAEH
Sbjct: 778 DLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEH 823
>12_02_0776 -
23064167-23064239,23065214-23065518,23065614-23065727,
23065812-23065918,23065997-23066143,23066227-23066326,
23066421-23066522,23066702-23066776,23066973-23067152,
23067266-23067355,23067435-23067559,23067847-23067910,
23067993-23068197,23068818-23068966
Length = 611
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -1
Query: 270 RQCQLVDQPGKLRKLFPSILPKQFSLPWVRLTSVVPTCLLLNIE 139
R+C LV PG LR P+ + P +RL++ VP C + N+E
Sbjct: 23 RRCHLV-VPG-LRLRPPASSSPPHAAPPLRLSNFVPRCYITNVE 64
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 331 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 420
+A S A T P S GW+ G S+ P+L+
Sbjct: 67 AAGSAARTRSPSQSNGWITGGSASAMPSLV 96
>04_03_0983 +
21423086-21423280,21423330-21423404,21423531-21423632,
21423721-21423774,21423880-21423972,21424526-21424618,
21427329-21427433,21427517-21427615,21427701-21427997,
21428512-21428622
Length = 407
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -3
Query: 373 LSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARETSK 230
+++ +R+ PW L++ R T +A + +KD SA + +S E K
Sbjct: 274 ITIREIRNHPWFLKNLPRELTEAAQAMYYKKDNSAPTYSVQSVEEIMK 321
>04_01_0596 - 7852529-7855185,7855545-7855581
Length = 897
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -3
Query: 280 DLSASVSACRSARETSKTLPFNPSEAIFVALGTVDKRGADLPLAEH 143
DL A A T K +P P+ ++VAL + + +++ LAEH
Sbjct: 670 DLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEH 715
>02_05_1331 + 35736543-35736638,35737407-35737525,35737670-35737715,
35738117-35738172,35738452-35738547,35738844-35738961,
35739406-35739672,35740023-35740124,35740302-35740659,
35740750-35740863,35741045-35741676,35741895-35742103,
35742597-35742819,35743419-35743538,35743888-35743914,
35744281-35745045,35745431-35748511
Length = 2142
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/72 (26%), Positives = 31/72 (43%)
Frame = -1
Query: 252 DQPGKLRKLFPSILPKQFSLPWVRLTSVVPTCLLLNIERSLDIVPIFASEWVDNLLLNTF 73
D P L I+ +Q + V TC+ IE +L+ V + S W + LL + +
Sbjct: 1217 DHPELSEHLCEEIMQRQLDAVDIIAQHQVLTCMAPWIE-NLNFVRLKESGWSERLLKSLY 1275
Query: 72 FTALRQAFIFPD 37
+ + FPD
Sbjct: 1276 YVTWKHGDQFPD 1287
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,481,249
Number of Sequences: 37544
Number of extensions: 388960
Number of successful extensions: 1108
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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