Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_M15
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su...   145   6e-36
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    29   0.58 
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    27   2.3  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.3  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    27   2.3  
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    26   4.1  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    26   4.1  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    26   4.1  

>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score =  145 bits (351), Expect = 6e-36
 Identities = 83/172 (48%), Positives = 106/172 (61%)
 Frame = +1

Query: 121 CRVDFINEKYPEVEDVVMVNVRSIAEMGAYVHLLXYNNIEGMXXXXXXXXXXXXXXNKLI 300
           CR+     ++PEV+++V+VNVR I EMGAYV LL Y+NIEGM               K I
Sbjct: 6   CRM--YENRFPEVDELVVVNVRQIQEMGAYVKLLEYDNIEGMVLLSELSRRRIRSVQKHI 63

Query: 301 RVGKTEPVVVIRVDKEKGYIXLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLHYET 480
           RVG+ E VVV+RVDKEKGYI LSKRRVS ED+ KC ER+ K+KAV+SI+RH+AE    + 
Sbjct: 64  RVGRNEVVVVLRVDKEKGYIDLSKRRVSPEDVVKCEERFNKSKAVHSIMRHIAE----KH 119

Query: 481 SEQLEELYKKTAWYFEEKYKKKASAYDFFKQAAVDPSVLDECGLHEXTKDVL 636
           +  LE +Y    W     Y+K   AYD FK A  +P  + E GL      V+
Sbjct: 120 NVPLETMYTTIGW---PLYRKYGHAYDAFKLAISNPDHVFE-GLEPPKSGVI 167


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 511 TAWYFEEKYKKKASAYDFFKQAAVDPSVLDEC 606
           T +YFE  +     A D F Q  +DP  L+EC
Sbjct: 107 TNYYFEVSHDALYGALDRFAQFFIDPLFLEEC 138


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1050

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 20/77 (25%), Positives = 36/77 (46%)
 Frame = +1

Query: 331  IRVDKEKGYIXLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLHYETSEQLEELYKK 510
            I  ++E  +  L   R+ A+ +  C        A   I+++  E +    S +LE L K 
Sbjct: 796  IEAERESMHQMLETFRIKADVVVLCLAAM-NLDAYRYIVKN--EHVRPSKSSELENLLKD 852

Query: 511  TAWYFEEKYKKKASAYD 561
             +W+ EEK K++ +  D
Sbjct: 853  DSWWQEEK-KRRGNTVD 868


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 443 SCDM*QSSSIMKLLSNWKNFIKKQLGTLKRNIRRKPRHMTSS 568
           +C M  + +  KLL+ ++N + +QL  L+   +  P  MTS+
Sbjct: 615 NCGMKLNRTKEKLLTPFRNLLMEQLNELQAKNQETPSEMTST 656


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 248 IMPSILL--YXRRWTYAPISAMDLTFTITTSSTSGYFSLI 135
           I P +++  +   W YA +S     F I+T   +GY +L+
Sbjct: 782 INPDVIMSIFTHAWVYARVSPSQKEFMISTLKHNGYITLM 821


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 587 GSTAACLKKSYAEAFFLYFSSKYQAVFL 504
           G + A +  S+ E  FL+ SS+Y +V L
Sbjct: 102 GVSLAAISSSFGEISFLHLSSRYHSVSL 129


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +1

Query: 487 QLEELYKKTAWYFEEKYKKKA-SAYDF 564
           Q+EEL  KT WY+  + +K   S Y++
Sbjct: 470 QIEELDAKTPWYYHYELEKDVKSTYEY 496


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 18/70 (25%), Positives = 31/70 (44%)
 Frame = +1

Query: 313 TEPVVVIRVDKEKGYIXLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLHYETSEQL 492
           TEP+V ++   E+  +     R S   +    E + KAK        + +  H ETS+ +
Sbjct: 606 TEPLVGLKTASEED-LPTWYYRHSLVFVSSSNECWKKAKRAKRRYGRLMQSEHTETSDMM 664

Query: 493 EELYKKTAWY 522
           E+ Y+    Y
Sbjct: 665 EQHYRAVTQY 674


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,513,063
Number of Sequences: 5004
Number of extensions: 49105
Number of successful extensions: 154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)