Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_M12
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...   131   1e-31
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...   127   1e-30
SPAC12G12.08 |mrpl6||mitochondrial ribosomal protein subunit L16...    29   0.77 
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   1.8  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   4.1  

>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score =  131 bits (316), Expect = 1e-31
 Identities = 61/131 (46%), Positives = 88/131 (67%)
 Frame = +2

Query: 242 KQIVXNQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVXKWFGS 421
           + I  ++ + IP+G++V +K+RLVTVKGPRGVLK+N + + ++++      +K   W GS
Sbjct: 3   RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKKQG-NTIKFIVWHGS 61

Query: 422 KKELAAVRTVCSHVXNMIKGVTKGFQYXMRAVYAHFPINCVTTXGNSIIEIRNFLGXKYI 601
           +K  A +RT  S + NMI GVT+GF+Y MR VYAHFPIN   T   +++EIRNFLG +  
Sbjct: 62  RKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERIT 121

Query: 602 TXVKMAPXVTV 634
             +K  P VTV
Sbjct: 122 RVIKCLPGVTV 132


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score =  127 bits (307), Expect = 1e-30
 Identities = 60/131 (45%), Positives = 86/131 (65%)
 Frame = +2

Query: 242 KQIVXNQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVXKWFGS 421
           + I  ++ + IP G+TV +K+R VTV GPRG LK+N +H+ ++++      +K   W GS
Sbjct: 3   RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKKQG-NTIKFIVWHGS 61

Query: 422 KKELAAVRTVCSHVXNMIKGVTKGFQYXMRAVYAHFPINCVTTXGNSIIEIRNFLGXKYI 601
           +K  A +R+V S + NMI GVT+GF+Y MR VYAHFPIN   T   +++EIRNFLG +  
Sbjct: 62  RKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERIT 121

Query: 602 TXVKMAPXVTV 634
             +K  P VTV
Sbjct: 122 RVIKCLPGVTV 132


>SPAC12G12.08 |mrpl6||mitochondrial ribosomal protein subunit
           L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 213

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
 Frame = +2

Query: 206 FHTCSCFLGPNMKQIVXNQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVN 385
           F TCS       +  V  +++ +P  +   ++   + + GP G L   F +  +++   N
Sbjct: 24  FTTCSA-----ARSYVGKKEIIVPKNIQFDLEGEQLQITGPHGTLNMRFPNY-LNLSKTN 77

Query: 386 PRLLKVX-----KWFGSKKELAAVRTVCSHVXNMIKGVTKGFQYXMRAV 517
             +LKV      +   +KK+ A   T  + + N +KGVT  +Q  ++ V
Sbjct: 78  D-ILKVGMDANIEKQATKKQRAMWGTTRAILANNVKGVTMYWQSIIKLV 125


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
 Frame = +2

Query: 269  KIPDGLTVHVKSRLVTV---KGP-RGVLKRNFKHLAVDIRMVNPRLLKVXKWFGSKKELA 436
            K+PDG+ +   SRL      K P    L   F H +VD+ +    L +   WF       
Sbjct: 1564 KVPDGIFLKT-SRLPIFEANKAPYNAYLLDFFTHGSVDMLIEQNNLKQSEIWFVLNDFSL 1622

Query: 437  AVRTVCSHVXNMIKGVT 487
             + T+CS + N++  VT
Sbjct: 1623 VLATICSCLGNLLNLVT 1639


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 435 ASSFLDPNHXSTFRRRGFTMRMSTAKC-LKFLLRTPRG 325
           A SFL+P   STF R  F+  +S   C +   LR+P G
Sbjct: 341 AQSFLEPQTRSTFLRYLFSDEVSVKVCHVLKELRSPTG 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,565,373
Number of Sequences: 5004
Number of extensions: 49100
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)