Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_M12
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044    154   7e-38
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...   149   3e-36
07_03_1082 - 23834840-23835928,23836879-23836974,23837739-23837930     27   9.9  

>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
          Length = 190

 Score =  154 bits (373), Expect = 7e-38
 Identities = 72/138 (52%), Positives = 100/138 (72%), Gaps = 1/138 (0%)
 Frame = +2

Query: 239 MKQIVXNQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-RLLKVXKWF 415
           MK I+ ++ ++IP+G+TV V +++VTV+GPRG L RNFKHL +D +++   R L+V  WF
Sbjct: 1   MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWF 60

Query: 416 GSKKELAAVRTVCSHVXNMIKGVTKGFQYXMRAVYAHFPINCVTTXGNSIIEIRNFLGXK 595
           G+++ +AA+RT  SHV N+I GVTKG++Y MR VYAHFPIN   T  N+ IEIRNFLG K
Sbjct: 61  GTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEK 120

Query: 596 YITXVKMAPXVTVVNSPK 649
            +  V M   VT++ S K
Sbjct: 121 KVRKVDMLEGVTILRSEK 138


>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score =  149 bits (360), Expect = 3e-36
 Identities = 70/131 (53%), Positives = 94/131 (71%), Gaps = 3/131 (2%)
 Frame = +2

Query: 266 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP---RLLKVXKWFGSKKELA 436
           ++IP G+TVHV +++VTV+GPRG L RNFKHL +D +++     R L+V  WFG+++ +A
Sbjct: 1   MEIPSGVTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMA 60

Query: 437 AVRTVCSHVXNMIKGVTKGFQYXMRAVYAHFPINCVTTXGNSIIEIRNFLGXKYITXVKM 616
           A+RT  SHV N+I GVTKG++Y MR VYAHFPIN   T  N+ IEIRNFLG K +  V M
Sbjct: 61  AIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDM 120

Query: 617 APXVTVVNSPK 649
              VT++ S K
Sbjct: 121 LEGVTILRSEK 131


>07_03_1082 - 23834840-23835928,23836879-23836974,23837739-23837930
          Length = 458

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +2

Query: 299 KSRLVTVKGPRGVLKRNFKH-LAVDIRMVNPRLLKVXKWFGSKKELAAVRTVCSHVXNMI 475
           K  ++   GP G +K   K+   +    +NPRL K+ +    KKEL  V    S+V  M+
Sbjct: 143 KDEVLYKAGPFGTVKAIRKNPTVIPDESINPRLAKILQQVAIKKEL-IVALANSNVREML 201

Query: 476 K 478
           +
Sbjct: 202 E 202


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,186,470
Number of Sequences: 37544
Number of extensions: 302622
Number of successful extensions: 480
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)