Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_M12
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...   154   5e-38
U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical pr...    31   0.94 
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical...    29   3.8  
Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score =  154 bits (374), Expect = 5e-38
 Identities = 71/138 (51%), Positives = 93/138 (67%)
 Frame = +2

Query: 239 MKQIVXNQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVXKWFG 418
           MK I  N  V  P+G+T  VK+R+V V GPRG ++++F+HL +++  +    L+V KWFG
Sbjct: 1   MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFG 60

Query: 419 SKKELAAVRTVCSHVXNMIKGVTKGFQYXMRAVYAHFPINCVTTXGNSIIEIRNFLGXKY 598
            +KELAA+RTVCSH+ NMIKGVT GF+Y MR+VYAHFPIN     GN  +EIRNFLG K 
Sbjct: 61  VRKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKI 120

Query: 599 ITXVKMAPXVTVVNSPKQ 652
           +  V +   V    S  Q
Sbjct: 121 VRRVPLPEGVIATISTAQ 138


>U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical
           protein T20B12.3 protein.
          Length = 504

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 489 LVTPLIMFXTCEQTVLTAASSFLDPNHXSTFRRRGFTMRMSTAKCL 352
           L  P +++ + ++++LT   SFL   H  T+    F  R+S  +CL
Sbjct: 275 LTNPSLLYMSQKESILTLLDSFLSSTHLPTYITASFLKRLS--RCL 318


>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
           protein Y47G6A.29 protein.
          Length = 2460

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
 Frame = +2

Query: 356 HLAVDIRMVNPRLLKVXKWFGSKKELAAVRTVCSHVXNM---IKGVT--KGFQYXMRAVY 520
           H+  D++++  +   +  WF   ++L ++RT C  + ++   I  +T  KGF + M+A +
Sbjct: 361 HVKHDVKIILTKETCMDIWFMRGEQLESIRTRCGPLSSLDMSILWITTEKGFYWNMKAEF 420

Query: 521 AHF 529
            +F
Sbjct: 421 LNF 423


>Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical
           protein M110.4b protein.
          Length = 1155

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 367 NSQVFKVPFENSAGPFNCHQTRFHMDR 287
           +SQ F +PF N++GP N +  R  M++
Sbjct: 26  SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52


>Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical
           protein M110.4a protein.
          Length = 1156

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 367 NSQVFKVPFENSAGPFNCHQTRFHMDR 287
           +SQ F +PF N++GP N +  R  M++
Sbjct: 26  SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,346,500
Number of Sequences: 27780
Number of extensions: 284233
Number of successful extensions: 564
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)