Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_M10
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...    88   1e-18
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    28   1.0  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    27   2.3  
SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb...    27   3.1  
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   7.1  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   9.4  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   9.4  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score = 87.8 bits (208), Expect = 1e-18
 Identities = 43/86 (50%), Positives = 55/86 (63%)
 Frame = +3

Query: 96  RHWQRFVKTWFNQPARRYRRKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRG 275
           + WQR+VKTWFNQP R+ RR+Q                 +RP V+ PT+RY+ KVRAGRG
Sbjct: 16  KDWQRYVKTWFNQPGRKLRRRQAR-QTKAAKIAPRPVEAIRPAVKPPTIRYNMKVRAGRG 74

Query: 276 FTLREIRAAGLNPVFARTIGIAVXPR 353
           FTL E++AAG++   A TIGI V  R
Sbjct: 75  FTLEELKAAGVSRRVASTIGIPVDHR 100



 Score = 70.1 bits (164), Expect = 3e-13
 Identities = 42/95 (44%), Positives = 57/95 (60%), Gaps = 1/95 (1%)
 Frame = +1

Query: 355 RRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEQERKLATQLRGPLMPVQQPA 531
           RRN+S ESLQ NV+RIK Y A LI+FP K  +  KG+A +      T +   ++P+ Q A
Sbjct: 101 RRNRSEESLQRNVERIKVYLAHLIVFPRKAGQPKKGDATDVSGAEQTDV-AAVLPITQEA 159

Query: 532 PKSVARPITEXEKNFKAYQYLRGARSIAKLVGIRA 636
            +  A+PITE  KNF A+  L   R+ A+  G RA
Sbjct: 160 VEE-AKPITEEAKNFNAFSTLSNERAYARYAGARA 193


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
 Frame = -1

Query: 287  TKSESSTGAYFSM----VPNSWASHYRT*RPSCRTWSYGLSFLY 168
            T   +STG+Y  M    +   W S   T    C TWSY  S+ Y
Sbjct: 1215 TVQGTSTGSYICMPHFQIQYDWCSAGVTDMSECNTWSYQKSYDY 1258


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 454 KGEANEQERKLATQLRGPLMPVQQPAPKSVARPITEXE 567
           + E N Q+ +  TQ +    PV++  PK  + P+T  E
Sbjct: 470 RDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTFSE 507


>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 436

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 275 IHSS*N*GRRIEPSICPNDWNCCXSPLDATSLLNHCKSMFKE 400
           +H S N G  ++P +  N WN     +D + +LN+ K++ +E
Sbjct: 22  VHGSYN-GLGLKPQMGWNSWNKYACDIDESIILNNAKAIKEE 62


>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 268 VEDSLFVKLGPQD*TQYLPERLELL 342
           +ED+LF +L   D T Y  +RLE+L
Sbjct: 95  LEDALFSQLDEFDDTAYREQRLEML 119


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 374 STDLLRLAGXYSNSNRSGKYWVQSCGP 294
           S  +L LA  Y N+NR   +WV  C P
Sbjct: 26  SNKVLHLALSYLNTNRQNPHWV--CDP 50


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 137 WLVKPSFNKSLPMPCGNVQLGIILFPLPILS 45
           W +KP++ KS    C  +QL I +   PIL+
Sbjct: 614 WTIKPTYEKSSNFSC--LQLPIPVLNTPILT 642


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,610,530
Number of Sequences: 5004
Number of extensions: 52092
Number of successful extensions: 142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)