Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_M10
(647 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86... 94 1e-19
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880... 93 2e-19
12_02_0891 + 24065001-24065101,24065260-24065345,24065902-240659... 31 0.79
03_05_0548 + 25439649-25439734,25440712-25440799,25441160-254412... 31 0.79
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929... 29 3.2
12_01_0564 - 4567650-4568063,4568154-4568624,4568722-4568923,457... 28 5.6
03_01_0439 + 3409422-3409795,3410672-3410897,3411004-3411282,341... 28 5.6
03_02_0098 + 5608787-5610812,5610956-5611053 28 7.4
01_01_0240 + 1987731-1988403,1989998-1990248 28 7.4
03_01_0536 - 4020235-4021161,4022760-4022808,4023203-4023267 27 9.7
02_04_0147 + 20194244-20195717,20195953-20195969 27 9.7
>06_01_0110 -
866728-866952,867035-867193,867315-867448,868225-868333
Length = 208
Score = 93.9 bits (223), Expect = 1e-19
Identities = 44/86 (51%), Positives = 56/86 (65%)
Frame = +3
Query: 96 RHWQRFVKTWFNQPARRYRRKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRG 275
+HWQ +VKTWFNQPAR+ RR+ LRPIV+C T++Y+ K RAGRG
Sbjct: 15 KHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQCQTLKYNMKSRAGRG 74
Query: 276 FTLREIRAAGLNPVFARTIGIAVXPR 353
FTL E++AAG+ FA TIGI+V R
Sbjct: 75 FTLEELKAAGIPKKFAPTIGISVDHR 100
Score = 77.0 bits (181), Expect = 1e-14
Identities = 40/98 (40%), Positives = 62/98 (63%), Gaps = 2/98 (2%)
Frame = +1
Query: 355 RRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEQERKLATQLRGPLMPVQQPA 531
R+N+S+E LQ NVQR+K Y+A+L++FP + +KV G++ +E ATQ++G MP+ +
Sbjct: 101 RKNRSLEGLQANVQRLKTYKAKLVIFPRRARKVKAGDSTPEELATATQVQGDYMPITRGE 160
Query: 532 PKSV-ARPITEXEKNFKAYQYLRGARSIAKLVGIRAXR 642
+SV +T+ K FKAY LR R + +G R R
Sbjct: 161 KRSVEVVKVTDDMKAFKAYAKLRVERMNQRHIGARQKR 198
>03_05_0108 -
20887146-20887370,20887460-20887618,20887930-20888063,
20888597-20888705
Length = 208
Score = 92.7 bits (220), Expect = 2e-19
Identities = 43/86 (50%), Positives = 56/86 (65%)
Frame = +3
Query: 96 RHWQRFVKTWFNQPARRYRRKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRG 275
+HWQ +VKTWFNQPAR+ RR+ LRPIV+C T++Y+ K RAGRG
Sbjct: 15 KHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQCQTLKYNMKSRAGRG 74
Query: 276 FTLREIRAAGLNPVFARTIGIAVXPR 353
FTL E++AAG+ +A TIGI+V R
Sbjct: 75 FTLEELKAAGIPKKYAPTIGISVDHR 100
Score = 77.4 bits (182), Expect = 9e-15
Identities = 41/98 (41%), Positives = 62/98 (63%), Gaps = 2/98 (2%)
Frame = +1
Query: 355 RRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEQERKLATQLRGPLMPVQQPA 531
R+N+S+E LQ NVQR+K Y+A+L++FP + +KV G++ +E ATQ++G MP+ +
Sbjct: 101 RKNRSLEGLQANVQRLKTYKAKLVIFPRRARKVKAGDSTAEELATATQVQGDYMPIARGE 160
Query: 532 PKSV-ARPITEXEKNFKAYQYLRGARSIAKLVGIRAXR 642
+SV +T+ K FKAY LR R + VG R R
Sbjct: 161 KRSVEVVKVTDEMKAFKAYAKLRVERMNQRHVGARQKR 198
>12_02_0891 +
24065001-24065101,24065260-24065345,24065902-24065965,
24066137-24066224,24066810-24066881,24067821-24067871,
24067940-24067984,24068086-24068178,24068265-24068366,
24068442-24068515,24068540-24068579
Length = 271
Score = 31.1 bits (67), Expect = 0.79
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 391 VQRIKEYRARLILFPKGKKVLKGEANEQERKLATQ 495
+ RI+E + ++F GK V G +EQ+ KLA +
Sbjct: 119 IMRIREPKTTALIFASGKMVCTGAKSEQQSKLAAR 153
>03_05_0548 +
25439649-25439734,25440712-25440799,25441160-25441204,
25441407-25441478,25442402-25442452,25442527-25442571,
25442670-25442762,25442848-25442949,25443024-25443097,
25443130-25443160
Length = 228
Score = 31.1 bits (67), Expect = 0.79
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 391 VQRIKEYRARLILFPKGKKVLKGEANEQERKLATQ 495
+ RI+E + ++F GK V G +EQ+ KLA +
Sbjct: 79 IMRIREPKTTALIFASGKMVCTGAKSEQQSKLAAR 113
>01_01_1166 +
9287840-9288040,9289752-9289799,9292166-9292282,
9293018-9293700,9295214-9297190,9298330-9298441,
9299848-9299904
Length = 1064
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 370 VESLQINVQRIKEYRARLILFPKGKKVLKGEANEQERKLA 489
++SL+ VQR+ E R R +L P G + +QER+L+
Sbjct: 182 IQSLRTRVQRVSERRLRYMLNPTG-SLSSSNYIDQERRLS 220
>12_01_0564 -
4567650-4568063,4568154-4568624,4568722-4568923,
4570395-4571104
Length = 598
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +1
Query: 130 TSQLDDTAESKIX*RKLRP*LHVLQLGRYVL*CDAQLFGTILKYAPVEDSLFVKLGP 300
T +L + S++ ++L L++ LG + D + L Y PVEDSLF+++ P
Sbjct: 343 TMELHERVYSEMAMKRLLDNLNIKVLGNTTV--DRLPIFSFLIYPPVEDSLFLRVEP 397
>03_01_0439 +
3409422-3409795,3410672-3410897,3411004-3411282,
3411374-3411550,3411653-3411706,3411806-3411954,
3412534-3412597,3412670-3412840,3412922-3413059,
3413180-3413215
Length = 555
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -1
Query: 392 TLICNDSTDLLRLAGXYSN-SNRSGKYWVQSCG 297
TLI N +T+L RL G Y N N SG ++ G
Sbjct: 167 TLIANKNTELQRLVGIYKNILNNSGVTLIEGRG 199
>03_02_0098 + 5608787-5610812,5610956-5611053
Length = 707
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = -1
Query: 539 DLGAGC*TGINGPRSC---VASLRSCSLASPFSTFLPFGNSIR 420
D GAG G++G RSC V ++ ++A+P LP +IR
Sbjct: 79 DAGAGAGAGVDGGRSCGEVVGAVWRAAMAAPDDPELPSLGAIR 121
>01_01_0240 + 1987731-1988403,1989998-1990248
Length = 307
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 383 CNDSTDLLRLAGXYSNSNRSGKYWVQSCG 297
C+ L+R+ G YS+S +Y V+ CG
Sbjct: 161 CSGGGTLVRVGGHYSDSGSYEEYSVEGCG 189
>03_01_0536 - 4020235-4021161,4022760-4022808,4023203-4023267
Length = 346
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -1
Query: 350 GXYSNSNRSGKYWVQSCGPNFTKSESSTGAYFSMVPNSWA--SHYRT*RP 207
G Y + +G Y ++ GP+ T S SS + + +S A SH+R RP
Sbjct: 103 GNYYKPSLAGSYRARAPGPHATTSSSSECSSYGGFSSSEAESSHHRRLRP 152
>02_04_0147 + 20194244-20195717,20195953-20195969
Length = 496
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 224 YRT*RPSCRTWSYGLSF 174
Y T RP CR W + LSF
Sbjct: 264 YHTARPGCRYWVFSLSF 280
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,042,293
Number of Sequences: 37544
Number of extensions: 344280
Number of successful extensions: 825
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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