Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_M10
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal prote...    96   2e-20
U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal prote...    79   4e-15
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr...    31   0.70 
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr...    31   0.70 
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr...    31   0.70 
U13876-13|AAA21172.3|  370|Caenorhabditis elegans Prion-like-(q/...    28   6.6  
Z82083-6|CAB04974.1|  388|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U97196-13|AAK68666.1|  430|Caenorhabditis elegans Altered averme...    27   8.7  
U41113-1|AAC25482.1|  430|Caenorhabditis elegans inhibitory amin...    27   8.7  

>U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform a protein.
          Length = 207

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 44/90 (48%), Positives = 59/90 (65%)
 Frame = +3

Query: 96  RHWQRFVKTWFNQPARRYRRKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRG 275
           +HW + +KTWF+QPAR+ RR+QN                LR +VRCP  RY+TK R GRG
Sbjct: 16  KHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKTRLGRG 75

Query: 276 FTLREIRAAGLNPVFARTIGIAVXPR*TQQ 365
           F+L+E++AAG++   ARTIGIAV  R T +
Sbjct: 76  FSLQELKAAGISQAQARTIGIAVDVRRTNK 105



 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 37/97 (38%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
 Frame = +1

Query: 355 RRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEQERKLATQLRGPLMPVQQPA 531
           R NK+ E L+ N  R+KEY+A+LILFP K     KG+++ +E K+A QLRG ++P+    
Sbjct: 102 RTNKTAEGLKANADRLKEYKAKLILFPKKASAPKKGDSSAEELKVAAQLRGDVLPLSHTI 161

Query: 532 PKSVARPITEXEKNFKAYQYLRGARSIAKLVGIRAXR 642
                R +T+ E+  + ++ LR  R+  K  G R  R
Sbjct: 162 TFDEPRQVTDAERKVEIFRLLRKERADKKYRGKREKR 198


>U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform b protein.
          Length = 88

 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 34/72 (47%), Positives = 46/72 (63%)
 Frame = +3

Query: 96  RHWQRFVKTWFNQPARRYRRKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRG 275
           +HW + +KTWF+QPAR+ RR+QN                LR +VRCP  RY+TK R GRG
Sbjct: 16  KHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKTRLGRG 75

Query: 276 FTLREIRAAGLN 311
           F+L+E++AA  N
Sbjct: 76  FSLQELKAAEEN 87


>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical protein
            F13B9.1c protein.
          Length = 1609

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +1

Query: 424  ILFPKGKKVLKGEANEQERKLATQLRGPLMPVQQPAPKSVARPITEXEKNFK 579
            ++F   K VLK     Q +  A   +GPL+P  Q AP +V   IT+  +N K
Sbjct: 879  VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 929


>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical protein
            F13B9.1b protein.
          Length = 1614

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +1

Query: 424  ILFPKGKKVLKGEANEQERKLATQLRGPLMPVQQPAPKSVARPITEXEKNFK 579
            ++F   K VLK     Q +  A   +GPL+P  Q AP +V   IT+  +N K
Sbjct: 879  VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 929


>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical protein
            F13B9.1a protein.
          Length = 1632

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +1

Query: 424  ILFPKGKKVLKGEANEQERKLATQLRGPLMPVQQPAPKSVARPITEXEKNFK 579
            ++F   K VLK     Q +  A   +GPL+P  Q AP +V   IT+  +N K
Sbjct: 901  VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 951


>U13876-13|AAA21172.3|  370|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 46
           protein.
          Length = 370

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
 Frame = +1

Query: 463 ANEQERKLATQLRGPLMPVQQPAP---------KSVARPITEXEKNFKAYQYLRGARSIA 615
           A + ++++  Q++ P  PVQQP P         +S  +P+   E + +  Q +R  ++ A
Sbjct: 102 AQQPQQQVQQQVQQPQQPVQQPQPTPIRPPQPQRSGQQPVQSFESHTQIVQPVRAVQANA 161

Query: 616 KLV 624
           +LV
Sbjct: 162 QLV 164


>Z82083-6|CAB04974.1|  388|Caenorhabditis elegans Hypothetical
           protein ZK1010.8 protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
 Frame = -2

Query: 196 RGAT-ALAFF-IXFCFLRYRRAGWLNQVLTNL 107
           RGAT A+A + I +CF+++   GW  QV+ N+
Sbjct: 9   RGATIAIAVWNIIYCFIQFGILGWQFQVVKNI 40


>U97196-13|AAK68666.1|  430|Caenorhabditis elegans Altered
           avermectin sensitivityprotein 14, isoform b protein.
          Length = 430

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +1

Query: 115 LKLGLTSQLDDTAESKIX*RKLRP*LHVLQLGRYVL*CDAQLFGTILKYAPV 270
           + LG+T+ L  T ++     KL P  ++  +  ++  C A +FG +L+YA V
Sbjct: 286 VSLGVTTLLTMTTQASGINSKLPPVSYIKAVDVWIGVCLAFIFGALLEYAVV 337


>U41113-1|AAC25482.1|  430|Caenorhabditis elegans inhibitory amino
           acid receptorsubunit gbr-2B protein.
          Length = 430

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +1

Query: 115 LKLGLTSQLDDTAESKIX*RKLRP*LHVLQLGRYVL*CDAQLFGTILKYAPV 270
           + LG+T+ L  T ++     KL P  ++  +  ++  C A +FG +L+YA V
Sbjct: 286 VSLGVTTLLTMTTQASGINTKLPPVSYIKAVDVWIGVCLAFIFGALLEYAVV 337


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,281,193
Number of Sequences: 27780
Number of extensions: 287707
Number of successful extensions: 714
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)