Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_M09
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   1.1  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    24   1.1  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    24   1.1  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    24   1.1  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   5.9  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    21   7.8  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    21   7.8  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    21   7.8  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    21   7.8  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    21   7.8  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    21   7.8  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    21   7.8  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    21   7.8  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    21   7.8  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    21   7.8  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    21   7.8  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    21   7.8  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 234 KNRQTREHLLVFFT 275
           KN QTREH L+ FT
Sbjct: 129 KNGQTREHALLAFT 142


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 234 KNRQTREHLLVFFT 275
           KN QTREH L+ FT
Sbjct: 56  KNGQTREHALLAFT 69


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 234 KNRQTREHLLVFFT 275
           KN QTREH L+ FT
Sbjct: 72  KNGQTREHALLAFT 85


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 234 KNRQTREHLLVFFT 275
           KN QTREH L+ FT
Sbjct: 129 KNGQTREHALLAFT 142


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +1

Query: 559 CKVTGKCGSVTVRLIPAPRGT 621
           C + G CG +   +   P+GT
Sbjct: 75  CPICGACGDIAHTVKYCPKGT 95


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 219 SCSRRKNRQTRE 254
           SCSR +NR+ RE
Sbjct: 3   SCSRDRNREYRE 14


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 219 SCSRRKNRQTRE 254
           SCSR +NR+ RE
Sbjct: 3   SCSRDRNREYRE 14


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 219 SCSRRKNRQTRE 254
           SCSR +NR+ RE
Sbjct: 3   SCSRDRNREYRE 14


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 219 SCSRRKNRQTRE 254
           SCSR +NR+ RE
Sbjct: 3   SCSRDRNREYRE 14


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 219 SCSRRKNRQTRE 254
           SCSR +NR+ RE
Sbjct: 3   SCSRDRNREYRE 14


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 219 SCSRRKNRQTRE 254
           SCSR +NR+ RE
Sbjct: 3   SCSRDRNREYRE 14


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 219 SCSRRKNRQTRE 254
           SCSR +NR+ RE
Sbjct: 3   SCSRDRNREYRE 14


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 219 SCSRRKNRQTRE 254
           SCSR +NR+ RE
Sbjct: 3   SCSRDRNREYRE 14


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 219 SCSRRKNRQTRE 254
           SCSR +NR+ RE
Sbjct: 3   SCSRDRNREYRE 14


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 219 SCSRRKNRQTRE 254
           SCSR +NR+ RE
Sbjct: 3   SCSRDRNREYRE 14


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 219 SCSRRKNRQTRE 254
           SCSR +NR+ RE
Sbjct: 3   SCSRDRNREYRE 14


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 219 SCSRRKNRQTRE 254
           SCSR +NR+ RE
Sbjct: 236 SCSRDRNREYRE 247


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,047
Number of Sequences: 438
Number of extensions: 3711
Number of successful extensions: 19
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)