Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_M08
(374 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.002
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 31 0.30
SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.53
SB_23556| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.93
SB_43189| Best HMM Match : PGAMP (HMM E-Value=2.1) 29 1.2
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_19124| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.1
SB_9087| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.1
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 28 2.8
SB_31178| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.8
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4) 27 3.7
SB_2776| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_51968| Best HMM Match : PT (HMM E-Value=0.54) 27 5.0
SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_32907| Best HMM Match : Gly_radical (HMM E-Value=6) 27 5.0
SB_5386| Best HMM Match : GRP (HMM E-Value=0.012) 27 5.0
SB_49940| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_17842| Best HMM Match : RVT_1 (HMM E-Value=2.2e-29) 27 6.5
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 27 6.5
SB_28880| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051) 27 6.5
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 38.7 bits (86), Expect = 0.002
Identities = 23/63 (36%), Positives = 28/63 (44%)
Frame = -1
Query: 353 RCRAVSRDIRTTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRSPH 174
R R+ SR R +R P R +R P P S R RS +PR R+ SR RR
Sbjct: 223 RSRSRSRSPRRRRRSRSPRRRRRSRSPSPHHRSHRSRSRSRSPRRRHSRSRSPTHRRHRS 282
Query: 173 HFH 165
H
Sbjct: 283 RSH 285
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 31.1 bits (67), Expect = 0.30
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -1
Query: 362 PSGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRN-KPSR 201
P GR ++ SR T R+ T+ N R P P S R S +PR R+ PSR
Sbjct: 534 PVGRTKSPSRSY---TSPRQRRTSPNNRSPPPRRRSPSPRRPSPSPRRRSTSPSR 585
>SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 294
Score = 30.3 bits (65), Expect = 0.53
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Frame = -1
Query: 338 SRDIRTTTEARRPGTARNTRRPKPTELSVCCR----ERSETPRHRNKPSRPVWSRRSPHH 171
+RD R T R P ++ R P+P++ R +R P + + RP +R P H
Sbjct: 191 NRDTRDTINNRHPRPSQQQRHPRPSQQQRHPRPSQQQRYPRPSQQQRQPRPSQQQRYPRH 250
>SB_23556| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 671
Score = 29.5 bits (63), Expect = 0.93
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +2
Query: 149 ISKYYNGNGVDSVETKQVEKVYSGDGASLSAPGSKRSALSASDAECFSLCLGAGPL 316
+S+Y ++++ + ++++Y + P S +A SD FSLC+ GPL
Sbjct: 140 LSEYLESRDCEAMDVR-LQRLYEHELVMYRLPESSATATPLSDLFDFSLCMCYGPL 194
>SB_43189| Best HMM Match : PGAMP (HMM E-Value=2.1)
Length = 461
Score = 29.1 bits (62), Expect = 1.2
Identities = 17/57 (29%), Positives = 22/57 (38%)
Frame = -1
Query: 344 AVSRDIRTTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRSPH 174
A+ + T RP + R R P S R +T PSRP + R PH
Sbjct: 4 ALHNTLTRTRVPSRPCSLRTVRHPHTGTKSTMAYARDDTLTRTRVPSRPSRTVRHPH 60
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 28.7 bits (61), Expect = 1.6
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +3
Query: 180 TPSRPNR-SRRFIPVTGRL*ALPAANAQLCRLRTPSVSRCAWAPGLCGGPDVPAHGSAP 353
TPS P+ S P T + P+ + TPS APG G P P+ SAP
Sbjct: 466 TPSTPSTPSTPSTPSTPSTPSTPSTPSTSSTPSTPSTPSTPSAPGTPGTPSTPSTPSAP 524
Score = 26.2 bits (55), Expect = 8.7
Identities = 19/72 (26%), Positives = 26/72 (36%)
Frame = +3
Query: 159 TTMEMVWTPSRPNRSRRFIPVTGRL*ALPAANAQLCRLRTPSVSRCAWAPGLCGGPDVPA 338
+T + TPS P+ P T + P+ + TPS P P P+
Sbjct: 447 STPSLTHTPSTPST-----PSTPSTPSTPSTPSTPSTPSTPSTPSTPSTPSTSSTPSTPS 501
Query: 339 HGSAPPGGGDPG 374
S P G PG
Sbjct: 502 TPSTPSAPGTPG 513
Score = 26.2 bits (55), Expect = 8.7
Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Frame = +3
Query: 180 TPSRPNR-SRRFIPVTGRL*ALPAANAQLCRLRTPSVSRCAWAPGLCGGPDVPAHGSAPP 356
TPS P+ S P T + P+ + TPS P G P P+ S P
Sbjct: 463 TPSTPSTPSTPSTPSTPSTPSTPSTPSTPSTSSTPSTPSTPSTPSAPGTPGTPSTPSTPS 522
Query: 357 GGGDP 371
G P
Sbjct: 523 APGTP 527
>SB_19124| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 28.3 bits (60), Expect = 2.1
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = -1
Query: 338 SRDIRTTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRSP 177
+RD R T R P ++ R P+P++ ++R P + + RP +R P
Sbjct: 151 NRDTRDTINNRHPRPSQQQRYPRPSQ-----QQRYPRPSQQQRHPRPSQQQRHP 199
>SB_9087| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 28.3 bits (60), Expect = 2.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 285 VSRCAWAPGLCGGPDVPAHGS 347
++R W+ LCGGPD+ GS
Sbjct: 108 ITRSWWSSRLCGGPDINDDGS 128
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 27.9 bits (59), Expect = 2.8
Identities = 17/51 (33%), Positives = 18/51 (35%)
Frame = -3
Query: 369 GHPLRAVQSREQGHQDHHRGPAPRHSEKHSASEADRAERLLPGALRDAPSP 217
G P R G D H GP RH H +RL P RD P
Sbjct: 132 GPPDRHTPPDRNGPPDRH-GPPDRHGMDHGRGRGRGRDRLSPPPHRDRGRP 181
>SB_31178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 281
Score = 27.9 bits (59), Expect = 2.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 321 HHRGPAPRHSEKHSASEADRAER 253
H GP+ RHS H +E++ A+R
Sbjct: 123 HKEGPSSRHSNVHELNESELAKR 145
>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
Length = 428
Score = 27.5 bits (58), Expect = 3.7
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -3
Query: 357 RAVQSREQGHQDHHRGPAPRHSEKHSASEADRAER 253
R +SR H+DH PR S HS D ER
Sbjct: 205 RRSRSRSLRHEDHDDA-TPRRSRSHSLRHEDEEER 238
>SB_2776| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1792
Score = 27.1 bits (57), Expect = 5.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 363 PLRAVQSREQGHQDHHRGPAPRHSEKH 283
P++ + R +G + HHR HS+KH
Sbjct: 760 PMQHLGDRREGKRRHHRRHHHSHSQKH 786
>SB_51968| Best HMM Match : PT (HMM E-Value=0.54)
Length = 514
Score = 27.1 bits (57), Expect = 5.0
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Frame = -1
Query: 368 VTPSGRCRAVSRDIRTTTEARRPGTARNTRR-PKPTELSVCCRERSETPRHRNKPSRPVW 192
VTP + R T++ P R+ P PT+ +R T R KP++P+
Sbjct: 132 VTPKPKTTVKRRPTERPTKSLLPEEEEKERQTPTPTKAKPTTIKRRPTERPTKKPTKPLL 191
Query: 191 SRRSP 177
P
Sbjct: 192 PEVEP 196
Score = 26.6 bits (56), Expect = 6.5
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = -1
Query: 347 RAVSRDIRTTTEARRPGTARNTRR--PKPTELSVCCRERSETPRHRNKPSRPV 195
R R + T+ P R P+PT+ R+R T R KP++P+
Sbjct: 257 RPTERPTKKPTKPLLPEVEPEEERATPRPTKAKPTTRKRMPTERPTKKPTKPL 309
>SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1056
Score = 27.1 bits (57), Expect = 5.0
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = -3
Query: 318 HRGPAPRHSEKHSASEADRAERLLPGALRDAPSPE 214
H P+P HS+ E LP PSPE
Sbjct: 741 HSQPSPEHSQPSPEHSLPSQEHSLPSPEHSQPSPE 775
>SB_32907| Best HMM Match : Gly_radical (HMM E-Value=6)
Length = 390
Score = 27.1 bits (57), Expect = 5.0
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 356 GRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSVCCRERSETPR 222
G+ A + + T ARRP RRP PT + R + TPR
Sbjct: 11 GQNNATTTGVVPTPRARRPVPTPRARRPNPTTKA---RRPAPTPR 52
>SB_5386| Best HMM Match : GRP (HMM E-Value=0.012)
Length = 800
Score = 27.1 bits (57), Expect = 5.0
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3
Query: 339 HGSAPPGGGDPG 374
HG PGGGDPG
Sbjct: 335 HGGGDPGGGDPG 346
>SB_49940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 569
Score = 26.6 bits (56), Expect = 6.5
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -3
Query: 330 HQDHHRGPAPRHSEKHSASEADRAERLLPGALRDAPSPE*TFSTCLVSTESTPFP 166
H HH RH KH+A A R + D+P+ + T +S +S FP
Sbjct: 167 HPSHHHVTKSRHQTKHNAKHATRVFSI------DSPNEDSQGKTANIS-DSASFP 214
>SB_17842| Best HMM Match : RVT_1 (HMM E-Value=2.2e-29)
Length = 1167
Score = 26.6 bits (56), Expect = 6.5
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = -1
Query: 365 TPSGRCRAVSRDIRTTTEARRPGTARNTR-RPKPTELSVCCRERS-ETPRHRNKPS 204
TPSG+ R D+R T E + ++R P P E+ +S ETP P+
Sbjct: 1080 TPSGKYRRNRIDLRKTWETQPESSSRKPEVVPPPVEMESSTTSQSLETPVQVETPN 1135
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -1
Query: 359 SGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSVCCRERSETP 225
S RC+ ++ ++ ++PG+A +PK + S R+RS +P
Sbjct: 1892 SRRCKTTAKALKKAKGKQKPGSATKKTKPK-QDSSKKKRKRSPSP 1935
>SB_28880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 196
Score = 26.6 bits (56), Expect = 6.5
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +3
Query: 285 VSRCAWAPGLCGGPDVPAH 341
V RC GL GGP+ PAH
Sbjct: 45 VERCCRFEGLPGGPEDPAH 63
>SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)
Length = 421
Score = 26.6 bits (56), Expect = 6.5
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Frame = +3
Query: 210 FIPVTGRL*ALPAANAQLCRLRTPSVSRCAWAPG-LCGGPDVPAHGSAPPGGGDPG 374
++P G +P N L P A PG G P + APP GG PG
Sbjct: 209 YVPQEGG--GIPPQNHPLTNYPAPPPQGYAPPPGGYPGAPPAGGYPGAPPPGGYPG 262
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,661,602
Number of Sequences: 59808
Number of extensions: 255652
Number of successful extensions: 908
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 619783250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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