Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_M08
(374 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75547-12|CAN99725.1| 141|Caenorhabditis elegans Hypothetical p... 30 0.47
AC006834-6|AAF40004.1| 233|Caenorhabditis elegans Hypothetical ... 29 1.4
AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical ... 28 1.9
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 28 2.5
AC024805-16|AAK39336.1| 448|Caenorhabditis elegans Hypothetical... 28 2.5
Z49069-2|CAA88865.1| 333|Caenorhabditis elegans Hypothetical pr... 27 3.3
AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical ... 27 3.3
AC084156-1|AAK68491.2| 466|Caenorhabditis elegans Hypothetical ... 27 3.3
AF036699-4|AAB88358.1| 281|Caenorhabditis elegans Collagen prot... 27 4.4
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 27 5.8
Z83232-4|CAB05756.2| 891|Caenorhabditis elegans Hypothetical pr... 27 5.8
U67953-4|AAL13329.1| 732|Caenorhabditis elegans Hypothetical pr... 27 5.8
AC024214-13|AAM97984.1| 296|Caenorhabditis elegans Collagen pro... 27 5.8
AC006761-8|AAF60552.2| 524|Caenorhabditis elegans Hypothetical ... 27 5.8
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 26 7.6
Z71177-3|CAA94869.1| 325|Caenorhabditis elegans Hypothetical pr... 26 7.6
Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical pr... 26 7.6
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 26 7.6
U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical pr... 26 7.6
AL110500-7|CAB54490.1| 489|Caenorhabditis elegans Hypothetical ... 26 7.6
>Z75547-12|CAN99725.1| 141|Caenorhabditis elegans Hypothetical
protein K10C8.3b protein.
Length = 141
Score = 30.3 bits (65), Expect = 0.47
Identities = 15/66 (22%), Positives = 29/66 (43%)
Frame = -1
Query: 368 VTPSGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWS 189
++ S R S+ ++ + +RP + R ++ P P R RS + + K + V
Sbjct: 10 LSASESSRKKSKSVKRCSSCKRPNSTRRSKTPDPNSEKEKVRNRSGSSSKKEKKNSLVNP 69
Query: 188 RRSPHH 171
P+H
Sbjct: 70 NLQPNH 75
>AC006834-6|AAF40004.1| 233|Caenorhabditis elegans Hypothetical
protein ZK973.9 protein.
Length = 233
Score = 28.7 bits (61), Expect = 1.4
Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Frame = +3
Query: 306 PGLCGGPDVPAHG--SAPPGGGDPG 374
PG GGP P HG PP G PG
Sbjct: 206 PGYPGGPPPPPHGYEGYPPPGAQPG 230
Score = 27.9 bits (59), Expect = 2.5
Identities = 13/20 (65%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Frame = +3
Query: 318 GGPDVPAHGSAPP--GGGDP 371
GGP P HG APP GGG P
Sbjct: 133 GGPMQPPHGFAPPPMGGGVP 152
>AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical
protein Y47D3B.7 protein.
Length = 1113
Score = 28.3 bits (60), Expect = 1.9
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -3
Query: 330 HQDHHRGPAPRHSEKHSASEA-DRAERLLPGALRDAPSPE*TFSTCLVSTESTPFP 166
+ HH+ P P H H + + E++ ++ DAP T T LV +S P
Sbjct: 220 YSQHHQSPPPHHHHHHPMPKIHENPEQVASPSIEDAPE---TKPTHLVEPQSPKSP 272
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 27.9 bits (59), Expect = 2.5
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Frame = +3
Query: 288 SRCAWAPGLCGGPD----VPAHGSAPPGGGDP 371
S C P L GGP +P G PP GG P
Sbjct: 1580 SHCQGPPPLMGGPPPRLGMPPPGPPPPNGGPP 1611
>AC024805-16|AAK39336.1| 448|Caenorhabditis elegans Hypothetical
protein Y51H7C.1 protein.
Length = 448
Score = 27.9 bits (59), Expect = 2.5
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +3
Query: 291 RCAWAPGLCGGPDVPAHGSAPPGGGDPG 374
R + PG GGP P P G G PG
Sbjct: 28 RYSGGPGTPGGPGTPGGPGTPGGPGTPG 55
Score = 27.1 bits (57), Expect = 4.4
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +3
Query: 276 TPSVSRCAWAPGLCGGPDVPAHGSAPPGGGDPG 374
TP PG GGP P P G G PG
Sbjct: 35 TPGGPGTPGGPGTPGGPGTPGGLGTPGGPGTPG 67
>Z49069-2|CAA88865.1| 333|Caenorhabditis elegans Hypothetical
protein K12D12.3 protein.
Length = 333
Score = 27.5 bits (58), Expect = 3.3
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +3
Query: 243 PAANAQLCRLRTPSVSRC-AWAPGLCGGPDVPAHGSAPPGGGDPG 374
PA C+ ++ + ++C A PG G P P P G PG
Sbjct: 109 PAPTGGSCQCQSAAENKCHAGPPGPKGSPGSPGPNGVPGVDGKPG 153
>AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical
protein Y32B12B.4 protein.
Length = 1528
Score = 27.5 bits (58), Expect = 3.3
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -3
Query: 318 HRGPAPRHSEKHSASEADRAERLLPGALRDAPSPE 214
H GP E+H +E D E LL G L D P +
Sbjct: 258 HSGPVAMKMEEHEETEEDFLE-LLNGTLDDVPDSD 291
>AC084156-1|AAK68491.2| 466|Caenorhabditis elegans Hypothetical
protein Y46E12BL.4 protein.
Length = 466
Score = 27.5 bits (58), Expect = 3.3
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = -3
Query: 363 PLRAVQSREQGHQDHHRGPAPRHSEKHSASEADRAERLLPGALRDA 226
PLR S Q H H R P HS + R E P AL+ A
Sbjct: 309 PLRPPPSSLQHHHHHRRSPPLFHSPVYKPKPRSRTES--PAALKAA 352
>AF036699-4|AAB88358.1| 281|Caenorhabditis elegans Collagen protein
104 protein.
Length = 281
Score = 27.1 bits (57), Expect = 4.4
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 303 APGLCGGPDVPAHGSAPPGGGDPG 374
APGL G P H P GG+PG
Sbjct: 161 APGLRGPDGHPGHPGNPGYGGEPG 184
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
protein W01F3.3 protein.
Length = 2175
Score = 26.6 bits (56), Expect = 5.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 323 TTTEARRPGTARNTRRPKPTELSVCCRERSETP 225
TTT +RP T T P+P E +E++E P
Sbjct: 163 TTTTTKRPPTTTTTEDPQPFEFHE-LQEQAENP 194
>Z83232-4|CAB05756.2| 891|Caenorhabditis elegans Hypothetical
protein K04B12.3 protein.
Length = 891
Score = 26.6 bits (56), Expect = 5.8
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -1
Query: 326 RTTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSR 201
R T A+RPG R R K +E V R + E KP +
Sbjct: 352 RLYTNAQRPGERRGADRFKDSEKPVKIRSKEEHLMRVEKPKK 393
>U67953-4|AAL13329.1| 732|Caenorhabditis elegans Hypothetical
protein ZC13.3 protein.
Length = 732
Score = 26.6 bits (56), Expect = 5.8
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 305 RPGTARNTRRPKPTEL 258
RP T + T++PKPTE+
Sbjct: 189 RPWTVKQTKKPKPTEV 204
>AC024214-13|AAM97984.1| 296|Caenorhabditis elegans Collagen
protein 106 protein.
Length = 296
Score = 26.6 bits (56), Expect = 5.8
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +3
Query: 279 PSVSRCAWAPGLCGGPDVPAHGSAPPGGGDPG 374
P CA PG G P AP G PG
Sbjct: 146 PGPDGCAGEPGTDGAPGEDGQNGAPGSPGGPG 177
>AC006761-8|AAF60552.2| 524|Caenorhabditis elegans Hypothetical
protein Y41G9A.6 protein.
Length = 524
Score = 26.6 bits (56), Expect = 5.8
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = -1
Query: 323 TTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRSPHHF 168
T+TE P + RP T+L+V ++TP H N+P P ++ SP F
Sbjct: 263 TSTETSSPFFLDQSVRP--TQLAVASSFPAQTPLH-NEPLPPPVTQNSPSIF 311
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical
protein H06A10.2 protein.
Length = 305
Score = 26.2 bits (55), Expect = 7.6
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +3
Query: 303 APGLCGGPDVPAHGSAPPGGGDPG 374
APG G P P AP G+PG
Sbjct: 247 APGAAGPPGPPGPAGAPGPDGNPG 270
>Z71177-3|CAA94869.1| 325|Caenorhabditis elegans Hypothetical
protein AC3.6 protein.
Length = 325
Score = 26.2 bits (55), Expect = 7.6
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +3
Query: 309 GLCGGPDVPAHGSAPPGGGDPG 374
G GGP V H P G G PG
Sbjct: 257 GQPGGPGVDGHPGRPGGSGRPG 278
>Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.6 protein.
Length = 290
Score = 26.2 bits (55), Expect = 7.6
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +3
Query: 279 PSVSRCAWAPGLCGGPDVPAHGSAPPGGGDPG 374
P S A APG G P P P G PG
Sbjct: 219 PGQSGGAGAPGPAGAPGAPGGPGQPGQDGQPG 250
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical
protein F54B11.2 protein.
Length = 304
Score = 26.2 bits (55), Expect = 7.6
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +3
Query: 303 APGLCGGPDVPAHGSAPPGGGDPG 374
APG G P P AP G+PG
Sbjct: 246 APGAAGPPGPPGPAGAPGPDGNPG 269
>U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical
protein F07C4.7 protein.
Length = 180
Score = 26.2 bits (55), Expect = 7.6
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +3
Query: 300 WAPGLCGGPDVPAHGSAPPGGGDPG 374
W PG GGP GS PG PG
Sbjct: 20 WGPGF-GGPGFGGPGSGGPGPRGPG 43
>AL110500-7|CAB54490.1| 489|Caenorhabditis elegans Hypothetical
protein Y87G2A.7 protein.
Length = 489
Score = 26.2 bits (55), Expect = 7.6
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +2
Query: 95 LRLSKMTMLIQQLNCXXSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPG 247
++LS+ L QQ+ S+ + Y ++ V KQ+ ++ GA PG
Sbjct: 419 IKLSEQLYLDQQIKLICSLCQLYPVKMINKVAIKQLLELVVFAGADFEMPG 469
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,953,877
Number of Sequences: 27780
Number of extensions: 187513
Number of successful extensions: 1012
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -