Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_M07
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    85   1e-17
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    28   0.94 
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    26   3.8  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    26   5.0  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    25   6.6  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    25   6.6  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    25   8.8  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 84.6 bits (200), Expect = 1e-17
 Identities = 53/132 (40%), Positives = 71/132 (53%)
 Frame = +1

Query: 214 DIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLXETYAFGDKKSYTXXXXXXXXXXXXX 393
           D+ I G NPSAE+A+E  +   E+  ++V + RL  T +F DKKSY              
Sbjct: 42  DVDI-GANPSAEDAEENAEEGTETVNNLVYSFRLSPT-SF-DKKSYMSYIKGYMKAIKAR 98

Query: 394 XEXKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGMVAMMEYXXFDGTQIPIM 573
            +   P++V VF+ N    +K IL  FK+  F+ GESMD D MV +M Y   DG   P M
Sbjct: 99  LQESNPERVPVFEKNAIGFVKKILANFKDYDFYIGESMDPDAMVVLMNYRE-DGI-TPYM 156

Query: 574 MFFKHGLQQXKF 609
           +FFK GL   KF
Sbjct: 157 IFFKDGLVSEKF 168



 Score = 35.1 bits (77), Expect = 0.008
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +3

Query: 123 DEMFSDTYKMKLVDEVIYEVTGRLVTRAQG 212
           DE+ SD Y +K VD+++YE   ++VT  QG
Sbjct: 11  DELVSDAYDLKEVDDIVYEADCQMVTVKQG 40


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 309 VVQDYVNSALDGRVRALVSLFSRRIKTLDLDISPVL 202
           V++D +NS LDG +  +    S R +T  LD+S ++
Sbjct: 341 VLEDQMNSLLDGSLYGICRPLSSRAQTSVLDLSDIV 376


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -2

Query: 221 WISALCSRHQPTGHFVNNFIDQFHFVGVREHLISQ 117
           W S  CS+   TG   +NFI  F   G     I Q
Sbjct: 216 WFSRRCSKINITGSVFDNFIPSFFSFGTHGDGIKQ 250


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +3

Query: 72  SPPTPSK*RSIRTLSLADEMFSDTYK 149
           SP TP     + TL+LAD+MFS T K
Sbjct: 438 SPTTPR----LSTLALADDMFSSTAK 459


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 489 ELKFLKPAEDVFHYFVHVCFKYFNLVR 409
           +  FLKP   ++ YF+ +  +Y +L+R
Sbjct: 175 QFDFLKPNNALYPYFMRIVQQYTSLIR 201


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 84  ELEAIKNNKNRKNGFSPQTN 25
           E+E+IK  KNR +GF   TN
Sbjct: 525 EIESIKYLKNRSSGFVAYTN 544


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 226 RSGYQPCALVTNLPVTS*ITSSTNFIL*VSENISSASDNV 107
           RS Y   A  +N P  + +T ST     +S+N SS+S+++
Sbjct: 337 RSAYSTSANYSNTPPRNTVTPSTARSSTLSQNPSSSSNSI 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,313,061
Number of Sequences: 5004
Number of extensions: 42523
Number of successful extensions: 101
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)