Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_M06
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    32   0.063
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    26   4.2  
SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces ...    25   9.6  
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    25   9.6  

>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
            Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 32.3 bits (70), Expect = 0.063
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
 Frame = +2

Query: 161  KMATKSYSKHKE--YKEFSSSGTVPYTGEQLDMIKSELLPKGSKLNSLGRG-GAGTREYH 331
            K   + +  HK   ++E S+SGT+    + L   K ++   GSK N  G   G  TR   
Sbjct: 1165 KFLLEGFQNHKNHLFEETSNSGTLACILDLLSQGKLQISIVGSKFNEYGLSEGYRTRLLE 1224

Query: 332  YEYKEETLP-AGK--YDRKDYRAVEEFTIPP 415
            ++    TL  +GK    +K+Y   E+   PP
Sbjct: 1225 HDNINVTLVLSGKESESKKNYGVTEKLATPP 1255


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = -1

Query: 294 EFSL---LPFGSSSDLIISNCSPVYGTVPLDE-NSLYSLCLLYDLVAILQDYRSD 142
           EF+L    P G  +DLII   +     V L+   S + L L YD+V  + DYR D
Sbjct: 801 EFNLKGPFPVGIYNDLIIKLENLGIRLVVLNRVRSRFGLYLYYDVVKNMIDYRKD 855


>SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 332

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -3

Query: 580 HVLRQVFGRXRTXHXRIARCRAEAGLIVVGACSTGRG 470
           +V R V G     H  ++RC     LI  G CS   G
Sbjct: 269 NVNRLVMGHTPQFHGIVSRCEGRILLIDTGLCSAYAG 305


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 5/28 (17%)
 Frame = -2

Query: 200 CILCVCC-----TIWWPSCKIIVATILL 132
           CILC CC     + WW S + +   +L+
Sbjct: 165 CILCACCSTSCPSYWWNSEEYLGPAVLM 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,453,241
Number of Sequences: 5004
Number of extensions: 47594
Number of successful extensions: 137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)