Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_M06
(657 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0772 - 19438910-19439209,19439692-19439828,19441334-194415... 29 2.5
09_02_0081 - 4041364-4041555,4041830-4041911,4042192-4042443,404... 29 3.3
01_06_1776 - 39815634-39815714,39815761-39815927,39816278-398164... 28 5.7
06_01_0584 - 4178391-4178732,4178854-4178915,4180361-4180481,418... 28 7.5
12_02_1046 + 25662715-25662884,25663163-25663757 27 9.9
08_02_1140 + 24649869-24651029 27 9.9
08_02_1109 + 24364464-24364710,24366572-24366638,24366639-243667... 27 9.9
08_01_1058 + 10765837-10766325 27 9.9
01_05_0388 - 21712266-21712715 27 9.9
>04_03_0772 -
19438910-19439209,19439692-19439828,19441334-19441570,
19441948-19442149,19442761-19442858,19443082-19443665,
19443725-19443882
Length = 571
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +2
Query: 275 KGSKLNSLGRGGAGTREYHYEYKEETLPAGKYDRKDYRAVE 397
K ++ N LG GG GT + E + K RKD R VE
Sbjct: 263 KFAERNKLGSGGCGTVYKGILHNNEEIAVKKLTRKDLREVE 303
>09_02_0081 -
4041364-4041555,4041830-4041911,4042192-4042443,
4042529-4044001,4044222-4044733,4044824-4045021
Length = 902
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = -2
Query: 401 TPQQPYSPSCHTFRQEVSPPCTRSDTPLYQPHRVQAS 291
+P +P SP H RQ PP PL P VQAS
Sbjct: 498 SPPEPPSPR-HPPRQPTPPPSPSQQPPLPTPQPVQAS 533
>01_06_1776 -
39815634-39815714,39815761-39815927,39816278-39816496,
39816614-39816680,39816771-39816932
Length = 231
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +2
Query: 296 LGRGGAGTREYHYEYKEETLPAGKYDRKDYRA 391
LG Y YE +EET PAG + R Y A
Sbjct: 157 LGTFSPQLEPYTYEGEEETTPAGMFARGSYSA 188
>06_01_0584 -
4178391-4178732,4178854-4178915,4180361-4180481,
4180592-4180732,4180830-4180959,4182306-4182436,
4182528-4182601,4182680-4182741,4183135-4183209,
4184658-4184760,4184835-4184991,4185549-4185743,
4186204-4186282,4186697-4186806,4187249-4187374,
4187475-4187541,4187622-4187791,4187880-4188018,
4188361-4188522,4188672-4188772,4188852-4188994,
4189438-4189537,4190364-4190414,4191062-4191169,
4191279-4191494,4191585-4191721,4191820-4191915,
4192017-4192234,4192764-4192925,4193006-4193163,
4194221-4194379
Length = 1364
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 158 CKMATKSYSKHKEYKEFSSSGTV-PYTGEQLDMIK 259
CK T+ ++KE +F S GT+ PY E L+ ++
Sbjct: 213 CKSVTREIRQYKESPKFLSGGTLHPYQLEGLNFLR 247
>12_02_1046 + 25662715-25662884,25663163-25663757
Length = 254
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 165 WPPNRTANTKNTRSSHQAAPSRTP 236
+PP+R A++ RS+H +PS P
Sbjct: 230 FPPDRPAHSVTVRSTHHPSPSAQP 253
>08_02_1140 + 24649869-24651029
Length = 386
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = -2
Query: 332 SDTPLYQPHRVQASSAYCLSEVART*SYPIVLRC-TGRCRLMRTPCIL 192
SD +Y P S YCL + T P+ L T C+ T CI+
Sbjct: 83 SDGSIYDPDSHPFHSLYCLDDTRETSLLPMRLSARTDHCQPCWTACIV 130
>08_02_1109 +
24364464-24364710,24366572-24366638,24366639-24366746,
24367200-24367332,24368096-24368167,24368754-24368886,
24369310-24369470
Length = 306
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/47 (31%), Positives = 18/47 (38%)
Frame = +2
Query: 299 GRGGAGTREYHYEYKEETLPAGKYDRKDYRAVEEFTIPPKTAESSTY 439
G G RE K GKYDR+ YR + F T + Y
Sbjct: 22 GGKGLQCREARINGKSPGKAVGKYDRRTYRDLRTFAFVETTEPLNVY 68
>08_01_1058 + 10765837-10766325
Length = 162
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -2
Query: 392 QPYSPSCHTFRQEVSPPCTRSDTPLYQP-HRVQASSAYCLSEVAR 261
+P +PS + SPPC R+D P P +A++A + AR
Sbjct: 83 RPSAPSWPSLNVASSPPCVRTDLPRAAPTGGARAAAAAVNGDAAR 127
>01_05_0388 - 21712266-21712715
Length = 149
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +2
Query: 299 GRGGAGTREYHYEYKEETLPAGKYDRKDYRAVEEFTIPPKTAESSTYYYQKEEREL 466
GRGGAG Y Y+Y+ +GK A EE AE++ + + R L
Sbjct: 46 GRGGAGASSYQYQYEYGGGGSGKVGYWGSVAEEERGTGQAAAEAAAKRSKSKRRWL 101
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,466,819
Number of Sequences: 37544
Number of extensions: 334950
Number of successful extensions: 1089
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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