Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_M06
         (657 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42415| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.36 
SB_1411| Best HMM Match : PT (HMM E-Value=0.079)                       29   3.3  
SB_25446| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_36082| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_49312| Best HMM Match : Mucin (HMM E-Value=0.19)                    28   5.8  
SB_45613| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_19783| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_35208| Best HMM Match : EGF_CA (HMM E-Value=1.2e-09)                28   7.7  

>SB_42415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 806

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +2

Query: 308 GAGTREYHYEYKEETLPAGKYDRKDYRAVEEFTIPPKTAESSTYYYQKEERELPA 472
           G G +  +   KE+TLPA   ++  YR   + T+P K ++ S     +  +  PA
Sbjct: 111 GKGIKTSNSPGKEKTLPASLPEKARYRDTNKLTVPAKQSKKSACKSPESAKNRPA 165


>SB_1411| Best HMM Match : PT (HMM E-Value=0.079)
          Length = 131

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = -2

Query: 365 FRQEVSPPCTRSDTPLYQPHRVQASSAYCLSEVART*SYPIVLRCTGR 222
           F+  V P C  SD P++QP  V  SS  C   V+     P+ L C GR
Sbjct: 76  FQPGVGPICHPSDDPIFQPGVV--SSFICHPRVS-----PVCLPCRGR 116


>SB_25446| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 517

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 263 ELLPKGSKLNSLGRGGAGTREYHYEYKEETLPAGKYDRKD 382
           E + +   L SLG  G  T EY Y Y EE +  G  +RK+
Sbjct: 174 EYIDREQLLTSLG--GTDTFEYTYPYAEEDMGLGPPERKE 211


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 21/74 (28%), Positives = 28/74 (37%)
 Frame = -2

Query: 401  TPQQPYSPSCHTFRQEVSPPCTRSDTPLYQPHRVQASSAYCLSEVART*SYPIVLRCTGR 222
            TP  P  P  H  +Q+  P C+ S   L  P   +     C S+  +  S P   +C   
Sbjct: 1855 TPTPPPPPQPH--QQQQQPTCSTSCLTLCTPDCPKK----CCSKPTKVGSAPTSSQCPSS 1908

Query: 221  CRLMRTPCILCVCC 180
            C L   P     CC
Sbjct: 1909 CLLACQPSCPMECC 1922


>SB_36082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/77 (24%), Positives = 30/77 (38%)
 Frame = +2

Query: 269 LPKGSKLNSLGRGGAGTREYHYEYKEETLPAGKYDRKDYRAVEEFTIPPKTAESSTYYYQ 448
           LP   +L SL  GG+ T EY  +   + L     D K+Y +  E     KT  +      
Sbjct: 171 LPDNPQLPSLSMGGSSTWEYDDDDFTQGLEFPDIDAKEYHSSNESLNDTKTDSTDARPQH 230

Query: 449 KEERELPAPTCGTRTYN 499
                + +  C   ++N
Sbjct: 231 TVREGIGSKMCKDSSFN 247


>SB_49312| Best HMM Match : Mucin (HMM E-Value=0.19)
          Length = 925

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 29/114 (25%), Positives = 43/114 (37%), Gaps = 9/114 (7%)
 Frame = +2

Query: 173 KSYSKHKEYKEFSSSGTVPYTGEQLDMIKSELLPKGSKLNSLGRGGAG---TREYHYE-- 337
           +SY+KHK+    +      Y G   + I          +N     GAG    RE   +  
Sbjct: 429 ESYNKHKQASRSTLDSNELYEGRDPEQISPPRGEYQELINDGATNGAGYTPLRESKKDKG 488

Query: 338 -YKEETLPAGKYDRKDY---RAVEEFTIPPKTAESSTYYYQKEERELPAPTCGT 487
            Y+    P+ + D   Y    +V+    PP T + S  Y   E  E P P  G+
Sbjct: 489 GYQALLRPSEEIDPSGYVHMPSVKRPHPPPNTRDISASYEDMERPERPHPDGGS 542


>SB_45613| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 266

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +2

Query: 269 LPKGSKLNSLGRGGAGTREYHYEYKEETLPAGKYDRKDYRAVEEFTIPPKT 421
           LP   +L SL  GG+ T EY  +   + L     D K+Y +  E     KT
Sbjct: 143 LPDNPQLPSLSMGGSSTWEYDDDDFTQGLEFPDIDAKEYHSSNESLNDTKT 193


>SB_19783| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
 Frame = +2

Query: 311 AGTREYHYEYKEETLPAGKYDRKDYRAVEEFTIPPKTAESS-TYYYQKEERELPAPTCGT 487
           +GT +Y + ++   +P+      DY       + P T   +  Y +    R +P    GT
Sbjct: 2   SGTNDYEWYHRLRVVPSTTSGTTDYEWYHRLRVVPSTTSGTIDYEWYHRLRVVPMTMSGT 61

Query: 488 RTY 496
             Y
Sbjct: 62  NDY 64


>SB_35208| Best HMM Match : EGF_CA (HMM E-Value=1.2e-09)
          Length = 598

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = +2

Query: 326 YHYEYKEETLP-AGKYDRKDYRAVEEFTIPPKTAESSTYYYQKEERELPAPTCGTRTYNY 502
           ++YE    T+P A +     Y      T+P      +T+YY+     +P       T+ Y
Sbjct: 236 HYYESIHTTVPQAAQRQNTHYYGSIYTTVPQAAQRQNTHYYESIYTTVPQAAQRQNTHYY 295

Query: 503 ES 508
           ES
Sbjct: 296 ES 297


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,101,164
Number of Sequences: 59808
Number of extensions: 386814
Number of successful extensions: 1067
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)