Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_M06
         (657 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L06237-1|AAA18904.1| 2468|Homo sapiens microtubule-associated pr...    36   0.17 
AK127131-1|BAC86843.1|  174|Homo sapiens protein ( Homo sapiens ...    33   0.68 
AL133561-1|CAB63715.1|  580|Homo sapiens hypothetical protein pr...    33   0.90 

>L06237-1|AAA18904.1| 2468|Homo sapiens microtubule-associated protein
            1B protein.
          Length = 2468

 Score = 35.5 bits (78), Expect = 0.17
 Identities = 25/85 (29%), Positives = 43/85 (50%)
 Frame = +2

Query: 254  IKSELLPKGSKLNSLGRGGAGTREYHYEYKEETLPAGKYDRKDYRAVEEFTIPPKTAESS 433
            +  +L   G + +S G+   G   Y Y+  EET  +   +  DY + E+ T   +T++  
Sbjct: 1847 LNRDLSTPGLEKDSGGKT-PGDFSYAYQKPEETTRSPDEEDYDYESYEKTT---RTSDVG 1902

Query: 434  TYYYQKEERELPAPTCGTRTYNYES 508
             YYY+K ER   +P+     Y+YE+
Sbjct: 1903 GYYYEKIERTTKSPS--DSGYSYET 1925


>AK127131-1|BAC86843.1|  174|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45188 fis, clone BRAWH3048724. ).
          Length = 174

 Score = 33.5 bits (73), Expect = 0.68
 Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
 Frame = -2

Query: 410 GW*TPQQPYSP----SCHTFRQEVSPPCTRSDTPLYQPHRVQASSAYCLSEVART*SYPI 243
           GW  P  P  P    SC  +     PP  +    L +P RV +SSA C      T S P+
Sbjct: 32  GW--PPLPAEPVPLRSCQQWGCARPPPVLQGAGFLQRPSRVSSSSAPCTRSADLTESAPL 89

Query: 242 VLRCTGRCRLMRTPCILCV 186
           +      C  +  P + C+
Sbjct: 90  LQLALASCLPLSDPVVFCL 108


>AL133561-1|CAB63715.1|  580|Homo sapiens hypothetical protein
           protein.
          Length = 580

 Score = 33.1 bits (72), Expect = 0.90
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 4/32 (12%)
 Frame = +3

Query: 153 NLARWPPN----RTANTKNTRSSHQAAPSRTP 236
           +L RWPP     RT   ++ R SH+A+P+RTP
Sbjct: 184 SLTRWPPRASPTRTPPRESPRMSHRASPTRTP 215


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,177,988
Number of Sequences: 237096
Number of extensions: 1795300
Number of successful extensions: 5438
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5436
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7366354010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)