Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_M06
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          25   0.48 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      25   0.48 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      25   0.64 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   4.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   5.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.8  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 353 LPAGKYDRKDYRAVEEFTIPPKTAESSTYYYQKEERELP 469
           LP+ +YD  DYR  EE+    K    + YY ++   +LP
Sbjct: 244 LPSKEYDLPDYRG-EEYLYSHKLL-LNRYYLERLSNDLP 280


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 353 LPAGKYDRKDYRAVEEFTIPPKTAESSTYYYQKEERELP 469
           LP+ +YD  DYR  EE+    K    + YY ++   +LP
Sbjct: 244 LPSKEYDLPDYRG-EEYLYSHKLL-LNRYYLERLSNDLP 280


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 386 YSPSCHTFRQEVSPPCTRSDTPLYQPH 306
           +SPS H    ++S P    D P+YQ H
Sbjct: 49  FSPSTHLM--DLSSPPEHRDLPIYQSH 73



 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 154 ILQDGHQIVQQTQRIQGVLI 213
           I+Q    +  QTQRIQG+ +
Sbjct: 3   IMQTTQPVSLQTQRIQGLYL 22


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/41 (26%), Positives = 16/41 (39%)
 Frame = -2

Query: 389 PYSPSCHTFRQEVSPPCTRSDTPLYQPHRVQASSAYCLSEV 267
           PY+       + + P  T+ DT   QPH         L+ V
Sbjct: 132 PYATRAEIKTESIQPETTKVDTREVQPHDASEKEQLGLASV 172


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 389 PYSPSCHTFRQEVSPPCTRSDTPLYQPHRVQASSA 285
           P  P C  FR+  SP  +  ++   +P +  +SSA
Sbjct: 563 PQPPQCPRFRKLDSPSDSGIESGTEKPDKPASSSA 597


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 129 IQKDCRYDNLARWP 170
           +  DCRYD + R P
Sbjct: 17  LTNDCRYDKMTRPP 30


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 187 TQRIQGVLIKRHRPVHRRTIGYD*VRATSER 279
           T RI    +KRH P ++R       RAT  R
Sbjct: 144 TPRINFTKLKRHHPRYKRPRTTFEPRATDSR 174


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,834
Number of Sequences: 438
Number of extensions: 3471
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)