Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_M04
(631 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626... 217 6e-57
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679... 215 3e-56
08_02_0087 + 12163706-12163757,12164877-12164961,12165039-121651... 29 4.0
01_01_0182 - 1561779-1561873,1561977-1562050,1562140-1562207,156... 28 5.3
08_02_1410 - 26876243-26876497,26877129-26877239,26877240-268773... 28 7.0
05_07_0050 + 27332855-27333009,27333725-27333790,27333971-273340... 27 9.3
03_03_0279 - 16134422-16134608,16134703-16134947,16135046-161353... 27 9.3
02_04_0381 - 22497519-22497769,22498157-22498247 27 9.3
>01_06_1659 +
38961637-38961639,38962361-38962433,38962531-38962613,
38962732-38962858,38962950-38963029,38963112-38963228,
38963393-38963527,38963714-38963883,38963970-38964087
Length = 301
Score = 217 bits (530), Expect = 6e-57
Identities = 107/195 (54%), Positives = 129/195 (66%)
Frame = +1
Query: 40 GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 219
GFVK K YFKR+QVKFKRRR+GKTDY AR RL QDKNKYNTPKYR + +NKD+T
Sbjct: 3 GFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59
Query: 220 CQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXX 399
Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAY TG
Sbjct: 60 AQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEG 119
Query: 400 XXXXXXXEYNVEPVDNGPGAFXCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFP 579
+Y VEP D F LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF
Sbjct: 120 NVEATGEDYYVEPADE-RRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFA 178
Query: 580 XYDAXSKKFNAEVHR 624
+ K+ ++++HR
Sbjct: 179 GFKKDEKQLDSDIHR 193
>01_06_1660 +
38966999-38967001,38967685-38967757,38967841-38967923,
38968042-38968168,38968260-38968339,38968428-38968544,
38968711-38968845,38969046-38969215,38969300-38969417
Length = 301
Score = 215 bits (524), Expect = 3e-56
Identities = 106/195 (54%), Positives = 128/195 (65%)
Frame = +1
Query: 40 GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 219
GFVK K Y KR+QVKFKRRR+GKTDY AR RL QDKNKYNTPKYR + +NKD+T
Sbjct: 3 GFVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59
Query: 220 CQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXX 399
Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAY TG
Sbjct: 60 AQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEG 119
Query: 400 XXXXXXXEYNVEPVDNGPGAFXCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFP 579
+Y VEP D F LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF
Sbjct: 120 NIEATGEDYYVEPADE-RRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFA 178
Query: 580 XYDAXSKKFNAEVHR 624
+ K+ ++++HR
Sbjct: 179 GFKKDEKQLDSDIHR 193
>08_02_0087 +
12163706-12163757,12164877-12164961,12165039-12165107,
12165757-12165869,12167570-12167681,12167784-12167927,
12169222-12169396,12169482-12169595,12169734-12169775,
12171093-12171193,12171515-12171623
Length = 371
Score = 28.7 bits (61), Expect = 4.0
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Frame = +1
Query: 1 VCGRHFVTXILNMGFVKVVKNKQYFKRYQ--VKFKRRREGKTDY-YARKRLVVQDKNKYN 171
+CGRH ++ L+M + K K F RY+ + K R+ Y A +++V+D++
Sbjct: 239 ICGRHPISVFLSMLKHCLTKIKIGFVRYEQSSQCKSMRDSSVSYASAAAKVLVEDRSLQQ 298
Query: 172 TPKYRLIVRLSN-KDVTCQVAYS 237
+ ++N + T VAY+
Sbjct: 299 GEHQNVTKSVANRRGATKSVAYN 321
>01_01_0182 -
1561779-1561873,1561977-1562050,1562140-1562207,
1562279-1562371,1562521-1562604,1562697-1562752,
1562843-1562950,1563051-1563225,1563237-1563422
Length = 312
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = -2
Query: 228 HLACYIFVGETHNQTIFRCVIFVLVLNNEAFTSIIISFPFTTPLEFYLVPLEVLFVLHNF 49
HL Y + + ++ FR +NN +TS ++++ T+P Y + +LF+ H
Sbjct: 113 HLCSYTYDRDCKDEDSFRGRCVAGAINN--YTSQLLTYDATSPSTQYNLTQALLFLAHFV 170
Query: 48 NESH 37
+ H
Sbjct: 171 GDIH 174
>08_02_1410 -
26876243-26876497,26877129-26877239,26877240-26877324,
26877620-26877672,26878318-26878440,26878514-26878597,
26878708-26878773,26879512-26879584,26879854-26879888,
26879970-26880212
Length = 375
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 163 KYNTPKYRLIVRLSNKDVTCQVAYSRI--EGDHIVCAAYSHEL 285
+YNT +YR + +S K V C+ + + E DH+ A S L
Sbjct: 274 RYNTSRYRELPHISIKCVFCKASVEPMGEESDHVHIIALSDAL 316
>05_07_0050 +
27332855-27333009,27333725-27333790,27333971-27334030,
27334425-27334515,27334893-27335073,27336037-27336128,
27336672-27336995
Length = 322
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = -2
Query: 216 YIFVGETHN-QTIFRCVIFVLVLNNEAFTSIIISFPFTTPLEFYLVPLEVLFVLHNFNE 43
Y F+G Q +F CV+F+ V N F + P PL Y + L L + E
Sbjct: 234 YPFMGPLRFVQVLFLCVVFMTVELNTFFLKFCLWIPPRNPLVVYRLILWWLIAIPTIRE 292
>03_03_0279 -
16134422-16134608,16134703-16134947,16135046-16135364,
16135451-16135675,16135780-16135946,16136030-16136146,
16136234-16136407,16136489-16136584,16136669-16136885,
16137005-16137123,16137249-16137441,16137562-16137713,
16137809-16137938,16138667-16138776
Length = 816
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 224 WHVTSLLERRTIRRYLGVLY 165
W S LERR RRYL +LY
Sbjct: 775 WKYVSNLERRETRRYLEMLY 794
>02_04_0381 - 22497519-22497769,22498157-22498247
Length = 113
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 294 WCEGWSDKLCCSIFNWSAISTKTASK 371
+C+G+ DK CC +WS K SK
Sbjct: 90 YCDGYDDKSCCD--DWSGDCHKCCSK 113
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,261,174
Number of Sequences: 37544
Number of extensions: 321290
Number of successful extensions: 697
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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