Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_M04
(631 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0) 175 2e-44
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30) 150 8e-37
SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05) 30 1.3
SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083) 30 1.3
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048) 28 7.2
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0) 27 9.5
SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14) 27 9.5
SB_29875| Best HMM Match : PHD (HMM E-Value=0.0014) 27 9.5
SB_13736| Best HMM Match : PHD (HMM E-Value=0.001) 27 9.5
SB_53096| Best HMM Match : PHD (HMM E-Value=0.001) 27 9.5
SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_46260| Best HMM Match : CUB (HMM E-Value=7.3e-24) 27 9.5
SB_29292| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_25649| Best HMM Match : Trypsin (HMM E-Value=0) 27 9.5
SB_12041| Best HMM Match : PHD (HMM E-Value=0.001) 27 9.5
>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
Length = 328
Score = 175 bits (427), Expect = 2e-44
Identities = 100/212 (47%), Positives = 123/212 (58%), Gaps = 37/212 (17%)
Frame = +1
Query: 100 RRREGKTDYYARKR------------------------LVVQDKNKYNTP------KYRL 189
RR +GKTDYYARKR ++ Q++NK P KYR
Sbjct: 17 RRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQERNKVGGPIFGSTQKYRR 76
Query: 190 IVRLS-NK------DVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXX 348
R NK ++AY++++GD ++ +AY+HELP +GVKVGLTNYAAAY TG
Sbjct: 77 NSRGKYNKRNIFILQTYARIAYAKLDGDRVLASAYAHELPNFGVKVGLTNYAAAYCTGLL 136
Query: 349 XXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFXCYLDVGLARTTTGARVFGAMK 528
EYNVE VD PGAF C+LDVGLART+TGARVFGA+K
Sbjct: 137 LARRLLTMLNLHEIYTGTDDVNGDEYNVESVDGSPGAFRCFLDVGLARTSTGARVFGALK 196
Query: 529 GAVDGGLNVPHSIKRFPXYDAXSKKFNAEVHR 624
GAVDGGL +PHS+KRFP YD+ SK F+AEVHR
Sbjct: 197 GAVDGGLEIPHSMKRFPGYDSESKDFSAEVHR 228
>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
Length = 113
Score = 150 bits (364), Expect = 8e-37
Identities = 68/112 (60%), Positives = 79/112 (70%)
Frame = +1
Query: 226 VAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXX 405
+AY+++EGD I+CAAY+HELPRYGVKVGLTNYAAAY TG
Sbjct: 1 IAYAKLEGDVIICAAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTE 60
Query: 406 XXXXXEYNVEPVDNGPGAFXCYLDVGLARTTTGARVFGAMKGAVDGGLNVPH 561
EYNVE +D PGAF C+LDVGLART+TGARVFGA+KGAVDGGL +PH
Sbjct: 61 EVNGDEYNVESIDGSPGAFRCFLDVGLARTSTGARVFGALKGAVDGGLEIPH 112
>SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)
Length = 791
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 551 LRPPSTAPFIAPKTRAPVVVRAKPTSK*HXNAPGPLST 438
+RP PF+ P +RAP A PT+ P P S+
Sbjct: 356 MRPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSS 393
>SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083)
Length = 624
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 551 LRPPSTAPFIAPKTRAPVVVRAKPTSK*HXNAPGPLST 438
+RP PF+ P +RAP A PT+ P P S+
Sbjct: 222 MRPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSS 259
>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +1
Query: 187 LIVRLSNKDVTCQVAYSRIEGD-HIVC 264
L++ LS +D+TC V YS G+ H +C
Sbjct: 108 LLLYLSKRDITCPVPYSSRNGELHTMC 134
>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3160
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 235 SRIEGDHIVCAAYSH-ELPRYGVKVGLTNYAAAY 333
++ GDH+ A+YSH ++ R+ V + L AAY
Sbjct: 133 AKYRGDHLDIASYSHQQIDRFAVLLDLWTNEAAY 166
>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2735
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +1
Query: 55 VKNKQYFKRYQVKFKRRREGKTDYYARKRLVV 150
VK+K+ KR K KR+ + K+D + RK+ ++
Sbjct: 228 VKHKRKQKRKSAKHKRKHKRKSDKHKRKQTLI 259
>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
Length = 1952
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 40 GFVKVVKNKQYFKRYQVKFKRRREGKTDY 126
GF++ +K + RY VK R R DY
Sbjct: 1090 GFIEALKRRDVSSRYNVKHARFRRATNDY 1118
>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 657
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 193 VRLSNKDVTCQVAYSRIEGDHIVCAAY 273
VRL ++D TC +YS I + +CA Y
Sbjct: 405 VRLVSRD-TCNASYSGIINERYICAGY 430
>SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14)
Length = 961
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 261 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 377
V+C + +C+ W CCSI N S + +S +W
Sbjct: 91 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 129
>SB_29875| Best HMM Match : PHD (HMM E-Value=0.0014)
Length = 598
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 261 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 377
V+C + +C+ W CCSI N S + +S +W
Sbjct: 104 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 142
>SB_13736| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 226
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 261 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 377
V+C + +C+ W CCSI N S + +S +W
Sbjct: 60 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 98
>SB_53096| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 623
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 261 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 377
V+C + +C+ W CCSI N S + +S +W
Sbjct: 60 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 98
>SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 897
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 261 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 377
V+C + +C+ W CCSI N S + +S +W
Sbjct: 359 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 397
>SB_46260| Best HMM Match : CUB (HMM E-Value=7.3e-24)
Length = 830
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 261 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 377
V+C + +C+ W CCSI N S + +S +W
Sbjct: 645 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 683
>SB_29292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 717
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 261 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 377
V+C + +C+ W CCSI N S + +S +W
Sbjct: 184 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 222
>SB_25649| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 718
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 193 VRLSNKDVTCQVAYSRIEGDHIVCAAY 273
VRL ++D TC +YS I + +CA Y
Sbjct: 690 VRLVSRD-TCNASYSGIINERYICAGY 715
>SB_12041| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 560
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 261 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 377
V+C + +C+ W CCSI N S + +S +W
Sbjct: 23 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 61
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,125,033
Number of Sequences: 59808
Number of extensions: 400956
Number of successful extensions: 1194
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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