Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_L24
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC212.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    30   0.33 
SPBCPT2R1.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    30   0.33 
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    26   4.1  
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    26   4.1  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    25   7.1  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    25   7.1  
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce...    25   7.1  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    25   9.4  

>SPAC212.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +1

Query: 487 DLXLSVNASNLEKFQLKIAQHELYEDGEILVEAILKDMAT 606
           D  L  N++N    +L I  HELY DGEI    +L+ + T
Sbjct: 11  DNPLISNSTNNVTHELLIDLHELYNDGEISRIVLLRTLVT 50


>SPBCPT2R1.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 119

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +1

Query: 487 DLXLSVNASNLEKFQLKIAQHELYEDGEILVEAILKDMAT 606
           D  L  N++N    +L I  HELY DGEI    +L+ + T
Sbjct: 11  DNPLISNSTNNVTHELLIDLHELYNDGEISRIVLLRTLVT 50


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/62 (22%), Positives = 30/62 (48%)
 Frame = +1

Query: 391 YRGSAFDNAVVIPPHRDLNVLRPXNPTIGEMEDLXLSVNASNLEKFQLKIAQHELYEDGE 570
           ++ S+  N  ++  + D N +      I E+E +   V     ++ +LKIA+ +L +   
Sbjct: 620 FKNSSAQNTKLVNRNLDFNKVEKFGKEIEELEPVVQKVLDEEKQERELKIAERDLKKGEN 679

Query: 571 IL 576
           I+
Sbjct: 680 IM 681


>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 201 KGRSAYIEFRKRFLQKSNSSNGSREYEQSAQAETSGL 311
           K    Y   +K  L K N+SNG   + QS   ETS L
Sbjct: 49  KNEYLYAVSQKGLLAKLNASNGDVIWRQSIAPETSQL 85


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 218 HRISEEILAEKQQQQWFPRIRTVS 289
           HR+ E  L E+++QQ + R+R ++
Sbjct: 572 HRVVERKLLEREEQQIYRRVRVLT 595


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 6/98 (6%)
 Frame = +3

Query: 57  KERLALANQRLPDTLHFNACRRSANGLWNFRTQGYPXHGRVRIGDVXDKGRSA------Y 218
           K+   L N R  +   F + R S    ++    G P  GR+       KGR+        
Sbjct: 341 KKNKVLVNMRPINPSSFVSDRHSPLHPYSVPENGKPNMGRIPSAPSLSKGRAMTADNMDM 400

Query: 219 IEFRKRFLQKSNSSNGSREYEQSAQAETSGLATDVEPR 332
           +    R  ++S  S    + +QS +++  GL    +PR
Sbjct: 401 LSLTTRRSRRSLYSPSLMQMQQSLKSDYEGLGRTFDPR 438


>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 408 EGGPPVAERTGFVVSRQTYRPVAQASSVP 322
           EGGP +     F + +   RP + ASSVP
Sbjct: 93  EGGPYIGSLANFGLRQTLGRPSSGASSVP 121


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 583 LRPKSLHPRIVHAERSSAETSRD*MR 506
           +R  SLHP++    R S +TSR   R
Sbjct: 872 IRNDSLHPKVGPPRRQSTDTSRSTFR 897


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,332,998
Number of Sequences: 5004
Number of extensions: 42563
Number of successful extensions: 137
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)