Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_L24
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80954-3|AAK77630.1|  603|Caenorhabditis elegans Defective in ge...    28   5.0  
U80954-2|AAK77629.1|  977|Caenorhabditis elegans Defective in ge...    28   5.0  
AF036706-7|AAK39282.1|  562|Caenorhabditis elegans Hypothetical ...    28   6.6  
Z71265-3|CAA95835.2|  403|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>U80954-3|AAK77630.1|  603|Caenorhabditis elegans Defective in germ
           line developmentprotein 3, isoform b protein.
          Length = 603

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 21/79 (26%), Positives = 36/79 (45%)
 Frame = +3

Query: 75  ANQRLPDTLHFNACRRSANGLWNFRTQGYPXHGRVRIGDVXDKGRSAYIEFRKRFLQKSN 254
           ANQR    + +N  +R A+ +   + QG P    + + ++     +  +EF  ++     
Sbjct: 74  ANQRRQ--VSYNT-KREAH-IHQLKAQGLPLPSNIPMIEINPTRVTLNMEFESQYYSLMT 129

Query: 255 SSNGSREYEQSAQAETSGL 311
           S NG  E   S  AET+ L
Sbjct: 130 SDNGDHENVASIMAETNTL 148


>U80954-2|AAK77629.1|  977|Caenorhabditis elegans Defective in germ
           line developmentprotein 3, isoform a protein.
          Length = 977

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 21/79 (26%), Positives = 36/79 (45%)
 Frame = +3

Query: 75  ANQRLPDTLHFNACRRSANGLWNFRTQGYPXHGRVRIGDVXDKGRSAYIEFRKRFLQKSN 254
           ANQR    + +N  +R A+ +   + QG P    + + ++     +  +EF  ++     
Sbjct: 74  ANQRRQ--VSYNT-KREAH-IHQLKAQGLPLPSNIPMIEINPTRVTLNMEFESQYYSLMT 129

Query: 255 SSNGSREYEQSAQAETSGL 311
           S NG  E   S  AET+ L
Sbjct: 130 SDNGDHENVASIMAETNTL 148


>AF036706-7|AAK39282.1|  562|Caenorhabditis elegans Hypothetical
           protein T07A9.10 protein.
          Length = 562

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = +1

Query: 445 NVLRPXN--PTIGEMEDLXLSVNASNLEKFQLKIAQHELYEDGEILVEAILKDMATLPVL 618
           N+LRP N    +G  +   L ++ S +      ++ +E++E+G  LVE + ++   +P +
Sbjct: 13  NILRPQNYDSKLGHRKFSVLVLDKSAMVVVNSCLSLNEVFEEGVTLVEDLTRNREPMPSM 72

Query: 619 HA 624
            A
Sbjct: 73  DA 74


>Z71265-3|CAA95835.2|  403|Caenorhabditis elegans Hypothetical
           protein M05B5.3 protein.
          Length = 403

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/58 (24%), Positives = 28/58 (48%)
 Frame = +3

Query: 174 RVRIGDVXDKGRSAYIEFRKRFLQKSNSSNGSREYEQSAQAETSGLATDVEPRTPAPP 347
           R+ + +  D+  S  +  R+R  ++  S     ++EQ++      + +D  P  PAPP
Sbjct: 174 RIDLDEETDEVDSDKVMKRRREFEEKKSCKRGNDHEQASSETRVSIESDAPPN-PAPP 230


>U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical protein
            C32E12.4 protein.
          Length = 1553

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 228  RKRFLQKSNSSNGSREYEQSAQAETSGLATDVEPRTPAPPADKFDDLQQI 377
            R+RF++    ++    YE++A  E      D   R   PPA KF  ++++
Sbjct: 1471 RRRFVRDDRDADLLLGYEKNATFEQLEKLFDQSSRNRRPPASKFAKIRRL 1520


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,356,178
Number of Sequences: 27780
Number of extensions: 255898
Number of successful extensions: 687
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)