Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_L22
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   4.1  
SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|c...    25   7.2  
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual           25   9.5  

>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 265 LHDKSYMNIANNMPLTAIHFREFARF 188
           L +KSY+  A+NMP T +   E +R+
Sbjct: 75  LREKSYLEGASNMPSTGMVTEEVSRY 100


>SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 183 FHNSSQSCASARLEFGL 133
           FH + +SC S RL FGL
Sbjct: 214 FHITEESCVSTRLFFGL 230


>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 604

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +1

Query: 226 AYCSQYSYMTYHANAQRYTSILHYVELGLATVLAANLIQHTLQLLPRRAASVAISPTQ 399
           AY S  S     A AQ+  +    V L  ++  AAN +Q     L R A++V  SP++
Sbjct: 14  AYSSALSSGKNGAAAQQAANSPKTVSLMTSSSKAANALQTHKSSLARAASAVPFSPSK 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,361,587
Number of Sequences: 5004
Number of extensions: 43935
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)