Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_L22
         (650 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060826-1|AAL28374.1|  542|Drosophila melanogaster GM01209p pro...    33   0.25 
AE014296-2887|AAF49357.1|  542|Drosophila melanogaster CG6479-PA...    33   0.25 
AE014296-2888|AAN11705.1|  538|Drosophila melanogaster CG6479-PB...    33   0.34 

>AY060826-1|AAL28374.1|  542|Drosophila melanogaster GM01209p
           protein.
          Length = 542

 Score = 33.5 bits (73), Expect = 0.25
 Identities = 12/50 (24%), Positives = 29/50 (58%)
 Frame = +3

Query: 120 SKCLSVQILALLRRTIDLNYENKKRANSLKWIAVNGILFAIFIYDLSCKC 269
           + C  +    +++R++DL  +  +  + LKW ++N +L ++ ++DL   C
Sbjct: 6   TNCSPLSKNPVVQRSLDLRLQGAQARHYLKWCSINVVLLSLLLFDLWQAC 55


>AE014296-2887|AAF49357.1|  542|Drosophila melanogaster CG6479-PA,
           isoform A protein.
          Length = 542

 Score = 33.5 bits (73), Expect = 0.25
 Identities = 12/50 (24%), Positives = 29/50 (58%)
 Frame = +3

Query: 120 SKCLSVQILALLRRTIDLNYENKKRANSLKWIAVNGILFAIFIYDLSCKC 269
           + C  +    +++R++DL  +  +  + LKW ++N +L ++ ++DL   C
Sbjct: 6   TNCSPLSKNPVVQRSLDLRLQGAQARHYLKWCSINVVLLSLLLFDLWQAC 55


>AE014296-2888|AAN11705.1|  538|Drosophila melanogaster CG6479-PB,
           isoform B protein.
          Length = 538

 Score = 33.1 bits (72), Expect = 0.34
 Identities = 11/40 (27%), Positives = 26/40 (65%)
 Frame = +3

Query: 150 LLRRTIDLNYENKKRANSLKWIAVNGILFAIFIYDLSCKC 269
           +++R++DL  +  +  + LKW ++N +L ++ ++DL   C
Sbjct: 12  VVQRSLDLRLQGAQARHYLKWCSINVVLLSLLLFDLWQAC 51


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,428,051
Number of Sequences: 53049
Number of extensions: 481696
Number of successful extensions: 1045
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2765538900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)