Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_L19
         (654 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    24   0.95 
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    22   5.1  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    21   6.7  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   8.9  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   8.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   8.9  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   8.9  

>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 24.2 bits (50), Expect = 0.95
 Identities = 15/50 (30%), Positives = 20/50 (40%)
 Frame = -2

Query: 647 GSDMYMLAGGGGCAPSNPMNCTSTSPSTVRCEMRWYCSRCGNSQKCTPFS 498
           G   +  A G     S+P     T P  VRC +R       N +  TPF+
Sbjct: 77  GHPQWPFAWGSLXRSSSPQTSAPTGPPIVRCALR---KHKPNRKPRTPFT 123


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -2

Query: 554 EMRWYCSRCGNSQK 513
           EMRWYC      +K
Sbjct: 290 EMRWYCQTATMEEK 303


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 616 PPPANMYMSEPPV 654
           PPP   Y  EPP+
Sbjct: 21  PPPFGYYHEEPPL 33


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = -2

Query: 641 DMYMLAGGGGCAPSNPMNCTSTSPSTVRCEMRWY 540
           + + L  G G    + + CTS+    +RC    Y
Sbjct: 47  EWFRLVAGEGDNCRDVIQCTSSGLQAIRCPAGLY 80


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 198 PCVHPIPGGMYPGRMLRIQXQSAA 269
           P ++P P G YP  +L  +    A
Sbjct: 162 PPMYPFPAGQYPYPILSPEMSQVA 185


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 198 PCVHPIPGGMYPGRMLRIQXQSAA 269
           P ++P P G YP  +L  +    A
Sbjct: 54  PPMYPFPAGQYPYPILSPEMSQVA 77


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -2

Query: 479 GSHSTSASKVSPLACSGIPPAVSS 408
           G H+T ++        G+PP V S
Sbjct: 255 GLHATGSAPSPTAGAGGLPPQVPS 278


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,152
Number of Sequences: 336
Number of extensions: 2765
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)