Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_L19
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    31   0.15 
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    30   0.34 
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.4  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    27   3.1  
SPCC16A11.07 |coq10||ubiquinone binding protein Coq10|Schizosacc...    26   4.1  
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    26   5.5  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    25   7.2  
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    25   9.5  

>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = -1

Query: 549 ALVLQPVRELAEVHAVQRHLEGARLAQHQRLEGLPVGVQRHPARRLLGAPAHVAEVVP 376
           ALV+ P RELA  H + +H E  + + + R+  +  G+     +RLL    HV    P
Sbjct: 195 ALVVAPTRELA--HQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATP 250


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 25/98 (25%), Positives = 45/98 (45%)
 Frame = -2

Query: 608 APSNPMNCTSTSPSTVRCEMRWYCSRCGNSQKCTPFSATLRARGSHSTSASKVSPLACSG 429
           +PS+    T+TSPS+         S   +S   +  S++  +  S S+S+S  S  + S 
Sbjct: 143 SPSSSSTTTTTSPSSSSSS-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 197

Query: 428 IPPAVSSAPQLMLLRWFRTTHISTKRKLRCSAMSSRGS 315
              + SS+  + +     ++H S+      S+ SSR S
Sbjct: 198 SSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPS 235


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
 Frame = -2

Query: 647 GSDMYMLAG--GGGCAPSNPMNCTSTSPSTVRCEMRWYCSRCGNSQKCTPFSATLRARGS 474
           GSD  + A    GG   S   + +STS ST         S   +S   TP S+++ +  S
Sbjct: 119 GSDSTLAASTISGGIYSST--SASSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSIS 176

Query: 473 HSTSASKVSPLACSGIPPAVSSA 405
            S S+S  S  A S    ++SSA
Sbjct: 177 SSASSSVSSSSASSS--GSISSA 197


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = -1

Query: 576 VPVHREVRDALVLQPVRELAEVHAVQRHLEGARLAQHQRLEGLPVGVQRHPARRLLGAPA 397
           +P  +E ++A + Q  ++  +    QR ++       Q++    +G+  HPA R    PA
Sbjct: 112 IPFQQE-KEAAMQQQQQQQQQQQLYQRQMQSREALLSQQIPPNQIGINAHPAVRQTPQPA 170


>SPCC16A11.07 |coq10||ubiquinone binding protein
           Coq10|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 164

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 448 ETFEALVLCEPRALKVALNGVHFCEFPHRLQYQRISHLTVD 570
           ETF++ V+C+P AL V  +  H     HRL  +  +H +++
Sbjct: 72  ETFDSKVVCDPVALTVLADASH-----HRLFRRLKTHWSIE 107


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 570 VHREVR-DALVLQPVRELAEVHAVQRHLEGARLAQHQRLEGLPVG 439
           VHR+++ + L+ QP+  L   +     LE  +L +   LEG+  G
Sbjct: 185 VHRDIKPENLLFQPIEYLPSQNYTPPSLEPNKLDEGMFLEGIGAG 229


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 590 NCTSTSPSTVRCEMRWYCSRCGNSQK-CT 507
           +C       V+C+ ++ CSRC  S++ CT
Sbjct: 17  SCLRCRRRKVKCDRQYPCSRCKESEESCT 45


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 515 KCTPFSATLRARGSHSTSASKVS 447
           K  PF+ATLR +  H +++ K S
Sbjct: 254 KHLPFTATLRKKSPHDSTSRKAS 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,263,247
Number of Sequences: 5004
Number of extensions: 42585
Number of successful extensions: 130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)