Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_L18
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory su...    73   2e-14
SPAC4H3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   4.5  

>SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory
           subunit Rpn12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 270

 Score = 73.3 bits (172), Expect = 2e-14
 Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 2/165 (1%)
 Frame = +2

Query: 86  CGALLNKIKLALT-QLTFLPSNNVAANQKXLILARDVLEIGAQWAVAVKDVKAFERYMSQ 262
           C   L K+K+ L  Q  F+P+++    ++    AR+V E G   ++   D+++F RY SQ
Sbjct: 21  CKKELLKLKVELAKQNLFVPTSD----KEKASFARNVFEYGVLVSIQTCDIESFARYASQ 76

Query: 263 LKCYYFDYKDHLPESAFTNQXXXXXXXXXXSQNRVAEFHTELERLP-VDVIRTDLYIRHP 439
           +  +Y D    L  S+              S+NR+AEFHT LE +P   +   D Y+   
Sbjct: 77  VIPFYHD---SLVPSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWV 133

Query: 440 LALXQYLMEGSYNKIFLAKGNVPAESYTFFMDTLLXTVRGXIAAC 574
           ++L Q +MEG+++K+     +     +++FM  ++  VR  IA C
Sbjct: 134 ISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKIVMSMVRNEIATC 178


>SPAC4H3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 404 QLEDAQVLCETRPLGFEKAGIIDSILTVGL 315
           +LEDA    + + +G E+ GII  ++T GL
Sbjct: 21  ELEDALNANQEKKIGLEQMGIIVQLVTEGL 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,290,171
Number of Sequences: 5004
Number of extensions: 43303
Number of successful extensions: 111
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)