Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_L18
         (574 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0151 - 14465479-14465675,14466280-14466401,14466934-144670...   112   2e-25
01_01_0001 + 2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,7...    28   4.6  

>07_03_0151 -
           14465479-14465675,14466280-14466401,14466934-14467081,
           14467146-14467167,14467299-14467393,14467395-14467438,
           14467750-14467841,14467911-14467982,14468188-14468229,
           14468333-14468494,14468631-14468683,14468808-14468925,
           14468974-14469150,14469573-14469639,14470195-14470273,
           14473805-14473862,14474257-14474346,14474429-14474540,
           14474649-14474912,14475361-14475463,14476200-14476278,
           14476748-14476852
          Length = 766

 Score =  112 bits (270), Expect = 2e-25
 Identities = 67/167 (40%), Positives = 90/167 (53%), Gaps = 2/167 (1%)
 Frame = +2

Query: 80  DKCGALLNKIKLALTQLTFLP-SNNVAANQ-KXLILARDVLEIGAQWAVAVKDVKAFERY 253
           D C  LL+++K+ LT+   LP S     N  + L +ARD+ E     +V ++D  AFER 
Sbjct: 25  DTCVDLLSQLKVRLTKFPSLPPSFQQTPNAVEELKIARDIYEHAVVLSVKIEDQDAFERD 84

Query: 254 MSQLKCYYFDYKDHLPESAFTNQXXXXXXXXXXSQNRVAEFHTELERLPVDVIRTDLYIR 433
             QLK YY D    +P S                QNR+AEFHTELE LPV  +     I+
Sbjct: 85  FCQLKPYYMDTCGIIPPSPQEYPILGLNLLRLLVQNRIAEFHTELELLPVTALENPC-IK 143

Query: 434 HPLALXQYLMEGSYNKIFLAKGNVPAESYTFFMDTLLXTVRGXIAAC 574
           H + L Q  MEG+YN++  A+  VP E+Y +FMD L  TVR  +A C
Sbjct: 144 HAVELEQSFMEGAYNRVLSARQAVPHETYVYFMDLLAKTVRDELAGC 190


>01_01_0001 +
           2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,
           7232-7320,7408-7608,8210-8311,9104-9187,9232-9244,
           9504-9562
          Length = 616

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/26 (46%), Positives = 20/26 (76%)
 Frame = +2

Query: 353 SQNRVAEFHTELERLPVDVIRTDLYI 430
           S++RV+E+   L R+ VDV+RTD ++
Sbjct: 379 SKDRVSEWLWTLHRIVVDVVRTDSHL 404


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,976,540
Number of Sequences: 37544
Number of extensions: 283010
Number of successful extensions: 586
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)