Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_L18
         (574 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY084160-1|AAL89898.1|  264|Drosophila melanogaster RE36854p pro...   182   2e-46
AF145314-1|AAF08395.1|  264|Drosophila melanogaster 26S proteaso...   182   2e-46
AE014296-2760|AAF49445.1|  264|Drosophila melanogaster CG4157-PA...   182   2e-46
AY075229-1|AAL68096.1|  262|Drosophila melanogaster AT18239p pro...   138   4e-33
AE014296-2456|AAS65003.1|  262|Drosophila melanogaster CG11552-P...   138   4e-33
BT004870-1|AAO45226.1|  618|Drosophila melanogaster LD38858p pro...    29   4.5  
AY061104-1|AAL28652.1|  516|Drosophila melanogaster LD09343p pro...    29   4.5  
AE014298-3092|AAN09531.1|  579|Drosophila melanogaster CG15445-P...    29   4.5  
AE014298-3091|AAF50848.2|  618|Drosophila melanogaster CG15445-P...    29   4.5  
AE014298-3090|AAN09530.2|  607|Drosophila melanogaster CG15445-P...    29   4.5  
AE014298-3089|AAN09529.2|  646|Drosophila melanogaster CG15445-P...    29   4.5  
AE014297-1207|AAF54561.1|  516|Drosophila melanogaster CG4089-PA...    29   4.5  

>AY084160-1|AAL89898.1|  264|Drosophila melanogaster RE36854p
           protein.
          Length = 264

 Score =  182 bits (444), Expect = 2e-46
 Identities = 91/176 (51%), Positives = 120/176 (68%), Gaps = 2/176 (1%)
 Frame = +2

Query: 53  EWAKQPSKLDKCGALLNKIKLALTQLTFLPS--NNVAANQKXLILARDVLEIGAQWAVAV 226
           EW+K+P    KCG LL+++K+AL ++ FLP+  N+  +++K LILAR VLE+  + +V  
Sbjct: 14  EWSKRPPNTVKCGQLLDQLKVALVKMAFLPTDGNDAQSSKKQLILARSVLEVAVEHSVLS 73

Query: 227 KDVKAFERYMSQLKCYYFDYKDHLPESAFTNQXXXXXXXXXXSQNRVAEFHTELERLPVD 406
           KD+ AFERYM+QLKCYY+DY   + ES    +          S NRV++FHTELE L VD
Sbjct: 74  KDLLAFERYMAQLKCYYYDYAKIIGESESKYKLLGLNLLYLLSGNRVSDFHTELELLSVD 133

Query: 407 VIRTDLYIRHPLALXQYLMEGSYNKIFLAKGNVPAESYTFFMDTLLXTVRGXIAAC 574
           VI+ + +IR  LAL QY+MEG YNKIF AK  VP E Y++FMD LL TVR  I AC
Sbjct: 134 VIQHNQFIRPILALEQYIMEGRYNKIFQAKSTVPVEVYSYFMDLLLETVRDEIGAC 189


>AF145314-1|AAF08395.1|  264|Drosophila melanogaster 26S proteasome
           regulatory complexsubunit p30 protein.
          Length = 264

 Score =  182 bits (444), Expect = 2e-46
 Identities = 91/176 (51%), Positives = 120/176 (68%), Gaps = 2/176 (1%)
 Frame = +2

Query: 53  EWAKQPSKLDKCGALLNKIKLALTQLTFLPS--NNVAANQKXLILARDVLEIGAQWAVAV 226
           EW+K+P    KCG LL+++K+AL ++ FLP+  N+  +++K LILAR VLE+  + +V  
Sbjct: 14  EWSKRPPNTVKCGQLLDQLKVALVKMAFLPTDGNDAQSSKKQLILARSVLEVAVEHSVLS 73

Query: 227 KDVKAFERYMSQLKCYYFDYKDHLPESAFTNQXXXXXXXXXXSQNRVAEFHTELERLPVD 406
           KD+ AFERYM+QLKCYY+DY   + ES    +          S NRV++FHTELE L VD
Sbjct: 74  KDLLAFERYMAQLKCYYYDYAKIIGESESKYKLLGLNLLYLLSGNRVSDFHTELELLSVD 133

Query: 407 VIRTDLYIRHPLALXQYLMEGSYNKIFLAKGNVPAESYTFFMDTLLXTVRGXIAAC 574
           VI+ + +IR  LAL QY+MEG YNKIF AK  VP E Y++FMD LL TVR  I AC
Sbjct: 134 VIQHNQFIRPILALEQYIMEGRYNKIFQAKSTVPVEVYSYFMDLLLETVRDEIGAC 189


>AE014296-2760|AAF49445.1|  264|Drosophila melanogaster CG4157-PA
           protein.
          Length = 264

 Score =  182 bits (444), Expect = 2e-46
 Identities = 91/176 (51%), Positives = 120/176 (68%), Gaps = 2/176 (1%)
 Frame = +2

Query: 53  EWAKQPSKLDKCGALLNKIKLALTQLTFLPS--NNVAANQKXLILARDVLEIGAQWAVAV 226
           EW+K+P    KCG LL+++K+AL ++ FLP+  N+  +++K LILAR VLE+  + +V  
Sbjct: 14  EWSKRPPNTVKCGQLLDQLKVALVKMAFLPTDGNDAQSSKKQLILARSVLEVAVEHSVLS 73

Query: 227 KDVKAFERYMSQLKCYYFDYKDHLPESAFTNQXXXXXXXXXXSQNRVAEFHTELERLPVD 406
           KD+ AFERYM+QLKCYY+DY   + ES    +          S NRV++FHTELE L VD
Sbjct: 74  KDLLAFERYMAQLKCYYYDYAKIIGESESKYKLLGLNLLYLLSGNRVSDFHTELELLSVD 133

Query: 407 VIRTDLYIRHPLALXQYLMEGSYNKIFLAKGNVPAESYTFFMDTLLXTVRGXIAAC 574
           VI+ + +IR  LAL QY+MEG YNKIF AK  VP E Y++FMD LL TVR  I AC
Sbjct: 134 VIQHNQFIRPILALEQYIMEGRYNKIFQAKSTVPVEVYSYFMDLLLETVRDEIGAC 189


>AY075229-1|AAL68096.1|  262|Drosophila melanogaster AT18239p
           protein.
          Length = 262

 Score =  138 bits (335), Expect = 4e-33
 Identities = 71/176 (40%), Positives = 103/176 (58%), Gaps = 2/176 (1%)
 Frame = +2

Query: 53  EWAKQPSKLDKCGALLNKIKLALTQLTF--LPSNNVAANQKXLILARDVLEIGAQWAVAV 226
           EW+K    L  C  LL+  KL L +  F  + + + +  +  LI +R++LEI  + ++ +
Sbjct: 11  EWSKHAPNLTHCSRLLDGFKLELVRSNFGTIQTASSSKQKDQLIKSREMLEIAVEHSITI 70

Query: 227 KDVKAFERYMSQLKCYYFDYKDHLPESAFTNQXXXXXXXXXXSQNRVAEFHTELERLPVD 406
           KD  AFERYM+QL  YY+DY  +L  S    +          + NR+A+FH ELERLP  
Sbjct: 71  KDYAAFERYMAQLNTYYYDYDKYLESSKHMYKFMGLNLLYMLATNRLADFHIELERLPTA 130

Query: 407 VIRTDLYIRHPLALXQYLMEGSYNKIFLAKGNVPAESYTFFMDTLLXTVRGXIAAC 574
           ++  D +I+  LAL  Y MEG YNKI  AK ++P+E Y+ FMD L+ T R  IA+C
Sbjct: 131 LLLHDSFIQPVLALENYYMEGRYNKILQAKKSMPSEIYSNFMDILVNTAREEIASC 186


>AE014296-2456|AAS65003.1|  262|Drosophila melanogaster CG11552-PA
           protein.
          Length = 262

 Score =  138 bits (335), Expect = 4e-33
 Identities = 71/176 (40%), Positives = 103/176 (58%), Gaps = 2/176 (1%)
 Frame = +2

Query: 53  EWAKQPSKLDKCGALLNKIKLALTQLTF--LPSNNVAANQKXLILARDVLEIGAQWAVAV 226
           EW+K    L  C  LL+  KL L +  F  + + + +  +  LI +R++LEI  + ++ +
Sbjct: 11  EWSKHAPNLTHCSRLLDGFKLELVRSNFGTIQTASSSKQKDQLIKSREMLEIAVEHSITI 70

Query: 227 KDVKAFERYMSQLKCYYFDYKDHLPESAFTNQXXXXXXXXXXSQNRVAEFHTELERLPVD 406
           KD  AFERYM+QL  YY+DY  +L  S    +          + NR+A+FH ELERLP  
Sbjct: 71  KDYAAFERYMAQLNTYYYDYDKYLESSKHMYKFMGLNLLYMLATNRLADFHIELERLPTA 130

Query: 407 VIRTDLYIRHPLALXQYLMEGSYNKIFLAKGNVPAESYTFFMDTLLXTVRGXIAAC 574
           ++  D +I+  LAL  Y MEG YNKI  AK ++P+E Y+ FMD L+ T R  IA+C
Sbjct: 131 LLLHDSFIQPVLALENYYMEGRYNKILQAKKSMPSEIYSNFMDILVNTAREEIASC 186


>BT004870-1|AAO45226.1|  618|Drosophila melanogaster LD38858p
           protein.
          Length = 618

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 140 PSNNVAANQKXLILARDVLEIGAQWA-VAVKDVKAFERYMSQLKCYYFDYKD 292
           PS + A+ Q  + L   ++E     A V ++  KA+ER+ S LK    +Y D
Sbjct: 548 PSTSNASGQTQVALPAPIIEAVINHARVEIETYKAYERFNSDLKLSDLEYLD 599


>AY061104-1|AAL28652.1|  516|Drosophila melanogaster LD09343p
           protein.
          Length = 516

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +2

Query: 86  CGALLNKIKLALTQLTFLP 142
           CG L NK+ L  TQL FLP
Sbjct: 143 CGYLTNKVDLCTTQLPFLP 161


>AE014298-3092|AAN09531.1|  579|Drosophila melanogaster CG15445-PC,
           isoform C protein.
          Length = 579

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 140 PSNNVAANQKXLILARDVLEIGAQWA-VAVKDVKAFERYMSQLKCYYFDYKD 292
           PS + A+ Q  + L   ++E     A V ++  KA+ER+ S LK    +Y D
Sbjct: 509 PSTSNASGQTQVALPAPIIEAVINHARVEIETYKAYERFNSDLKLSDLEYLD 560


>AE014298-3091|AAF50848.2|  618|Drosophila melanogaster CG15445-PA,
           isoform A protein.
          Length = 618

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 140 PSNNVAANQKXLILARDVLEIGAQWA-VAVKDVKAFERYMSQLKCYYFDYKD 292
           PS + A+ Q  + L   ++E     A V ++  KA+ER+ S LK    +Y D
Sbjct: 548 PSTSNASGQTQVALPAPIIEAVINHARVEIETYKAYERFNSDLKLSDLEYLD 599


>AE014298-3090|AAN09530.2|  607|Drosophila melanogaster CG15445-PB,
           isoform B protein.
          Length = 607

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 140 PSNNVAANQKXLILARDVLEIGAQWA-VAVKDVKAFERYMSQLKCYYFDYKD 292
           PS + A+ Q  + L   ++E     A V ++  KA+ER+ S LK    +Y D
Sbjct: 537 PSTSNASGQTQVALPAPIIEAVINHARVEIETYKAYERFNSDLKLSDLEYLD 588


>AE014298-3089|AAN09529.2|  646|Drosophila melanogaster CG15445-PD,
           isoform D protein.
          Length = 646

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 140 PSNNVAANQKXLILARDVLEIGAQWA-VAVKDVKAFERYMSQLKCYYFDYKD 292
           PS + A+ Q  + L   ++E     A V ++  KA+ER+ S LK    +Y D
Sbjct: 576 PSTSNASGQTQVALPAPIIEAVINHARVEIETYKAYERFNSDLKLSDLEYLD 627


>AE014297-1207|AAF54561.1|  516|Drosophila melanogaster CG4089-PA
           protein.
          Length = 516

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +2

Query: 86  CGALLNKIKLALTQLTFLP 142
           CG L NK+ L  TQL FLP
Sbjct: 143 CGYLTNKVDLCTTQLPFLP 161


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,854,368
Number of Sequences: 53049
Number of extensions: 490752
Number of successful extensions: 1359
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1356
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2255362491
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)