Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_L18
         (574 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69904-5|CAA93778.1|  250|Caenorhabditis elegans Hypothetical pr...    85   4e-17
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z81587-1|CAB04701.1|  340|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z67755-5|CAA91758.2|  966|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AF200199-1|AAF13716.1|  966|Caenorhabditis elegans MES-1 protein.      27   7.2  
AF067211-16|AAC16988.3|  399|Caenorhabditis elegans Hypothetical...    27   9.5  

>Z69904-5|CAA93778.1|  250|Caenorhabditis elegans Hypothetical
           protein ZK20.5 protein.
          Length = 250

 Score = 84.6 bits (200), Expect = 4e-17
 Identities = 55/173 (31%), Positives = 89/173 (51%), Gaps = 2/173 (1%)
 Frame = +2

Query: 56  WAKQPSKLDKCGALLNKIKLALTQLTFLPSNNVAANQKXLILA-RDVLEIGAQWAVAVKD 232
           WAK+P  L         ++ AL +LT + S +   N K   LA +D+ EI    A+   D
Sbjct: 12  WAKEPKDLVA-------VEKALNELTKVLSASSDLNDKQSALASKDLYEISVLLAILKHD 64

Query: 233 VKAFERYMSQLKCYYFDYKDHLPESAFTNQXXXXXXXXXX-SQNRVAEFHTELERLPVDV 409
            + F+ Y++Q+  YY       PE++               + NR+++FH  LE++P   
Sbjct: 65  FETFDDYINQMHTYY----TMAPENSENKHLMTGLHLMFLLAANRLSDFHMLLEQIPQKE 120

Query: 410 IRTDLYIRHPLALXQYLMEGSYNKIFLAKGNVPAESYTFFMDTLLXTVRGXIA 568
             ++ YI  P+ + Q LMEG+YNK+ L + N+P+  YT F+  +L T+R  IA
Sbjct: 121 QTSNAYISTPVRIEQSLMEGAYNKVVLTEKNIPSPFYTIFIRIMLDTIRREIA 173


>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical protein
            K10C2.1 protein.
          Length = 2314

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 292  PPPGVCIHKPTVRIESIIPAFSKP-SGRVSHRT 387
            PPP V    PT  I +++P  S P SG VS  T
Sbjct: 2205 PPPSVATAGPTGPILTVVPVSSAPTSGAVSSTT 2237


>Z81587-1|CAB04701.1|  340|Caenorhabditis elegans Hypothetical
           protein T06G6.1 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
 Frame = -2

Query: 249 LSKALTSFTATAHCAPISNTSLAKINXFWFAATLLLGRNV--NCVRASFI--LFKSAPHL 82
           L+ ALTS T   +CA IS   L      W A   L   N+  N  R   I  L  S  H 
Sbjct: 19  LASALTSVTLKFNCAFISTIVLISYCFSWLAIQALWNNNIFSNSTRLILIVCLLNSVVHQ 78

Query: 81  SSLL 70
           ++++
Sbjct: 79  TTVM 82


>Z67755-5|CAA91758.2|  966|Caenorhabditis elegans Hypothetical
           protein F54F7.5 protein.
          Length = 966

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 89  GALLNKIKLALTQLTFLPSNNVAANQKXLI 178
           G +LN + +     +F+PSNN A + K L+
Sbjct: 107 GTVLNDVFIVCLDTSFMPSNNSAPSAKRLL 136


>AF200199-1|AAF13716.1|  966|Caenorhabditis elegans MES-1 protein.
          Length = 966

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 89  GALLNKIKLALTQLTFLPSNNVAANQKXLI 178
           G +LN + +     +F+PSNN A + K L+
Sbjct: 107 GTVLNDVFIVCLDTSFMPSNNSAPSAKRLL 136


>AF067211-16|AAC16988.3|  399|Caenorhabditis elegans Hypothetical
           protein B0205.4 protein.
          Length = 399

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 10/59 (16%)
 Frame = -1

Query: 277 IITLELRH---VSLESFDVFHG--DGPLCTY---FQYISS--QNQXFLVCCDIITWKKR 131
           ++ + +RH   +S+ S +  HG  D P+  Y    Q IS   +N  F++C D + W +R
Sbjct: 258 MVGVHIRHGMDISMNSRNRIHGHVDTPIEYYKRAIQQISKIYENVAFIICSDNVAWARR 316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,784,678
Number of Sequences: 27780
Number of extensions: 251292
Number of successful extensions: 542
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)