Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_L16
(628 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome be... 169 2e-42
Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical pr... 88 4e-18
Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical pr... 75 6e-14
Z81079-4|CAB03081.1| 236|Caenorhabditis elegans Hypothetical pr... 33 0.13
AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome al... 33 0.17
Z82265-5|CAB05175.1| 334|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z81048-3|CAB02841.1| 407|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z81028-3|CAB02691.1| 545|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical pr... 27 8.3
>AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome beta
subunit protein 1 protein.
Length = 239
Score = 169 bits (410), Expect = 2e-42
Identities = 76/156 (48%), Positives = 106/156 (67%)
Frame = +2
Query: 158 STGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIAD 337
STGT+++A E++GGVV+G DSRT+ G++I +R T+K+T ITD + CRSGSAADTQAIAD
Sbjct: 21 STGTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSAADTQAIAD 80
Query: 338 IVTYHLNFHKMELXDPPLVETAAAIFRELCYNYRDSLMAGILVAGWDKKKGAQIYSIPIG 517
I YH++ + M P + ++ IFR+ YNYR+ L A +LVAGWD++ G Q+Y+IPIG
Sbjct: 81 IAKYHIDVYTMTENKPVTIYRSSQIFRQFLYNYREQLSASVLVAGWDEELGGQVYAIPIG 140
Query: 518 GMVQRQAXXXXXXXXXXXXXXXDANFKPNMTKEEAK 625
G V RQ D+ ++PN+T EE K
Sbjct: 141 GFVSRQRSTASGSGSTFVQGFLDSQWRPNLTLEECK 176
>Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical
protein C47B2.4 protein.
Length = 277
Score = 88.2 bits (209), Expect = 4e-18
Identities = 50/157 (31%), Positives = 82/157 (52%)
Frame = +2
Query: 158 STGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIAD 337
STGT+I+A F GG+V+GADSR T G IA++ +K+ K+T+ IY C +G+AAD +
Sbjct: 44 STGTTIVAVAFKGGLVMGADSRATAGNIIADKHCEKVHKLTESIYACGAGTAADLDQVTK 103
Query: 338 IVTYHLNFHKMELXDPPLVETAAAIFRELCYNYRDSLMAGILVAGWDKKKGAQIYSIPIG 517
+++ +L ++ V TA ++ +NY+ + A +L+ G D G +Y
Sbjct: 104 MLSGNLRLLELNTGRKARVITALRQAKQHLFNYQGYIGAYLLIGGVD-PTGPHLYMCSAN 162
Query: 518 GMVQRQAXXXXXXXXXXXXXXXDANFKPNMTKEEAKK 628
G + +FK +MTK+EA+K
Sbjct: 163 GTTMAFPFTAQGSGSYAAITILERDFKVDMTKDEAEK 199
>Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical
protein K05C4.1 protein.
Length = 284
Score = 74.5 bits (175), Expect = 6e-14
Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 1/146 (0%)
Frame = +2
Query: 194 GGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIVTYHLNFHKME 373
GG+++ DSR ++G YI+++ K+ I D++ +G AAD Q IV + +++
Sbjct: 81 GGIIVAVDSRASSGEYISSKSVMKILDIGDRMVATMAGGAADCQFWTRIVAKYCTLYELR 140
Query: 374 LXDPPLVETAAAIFRELCYNYR-DSLMAGILVAGWDKKKGAQIYSIPIGGMVQRQAXXXX 550
V A+ F Y YR L G +VAG+D KKG QI+ + G +
Sbjct: 141 EKTSITVSAASKYFANTLYGYRGQGLSVGSMVAGYD-KKGPQIFKVDSEGDRCQLKVCSV 199
Query: 551 XXXXXXXXXXXDANFKPNMTKEEAKK 628
D ++KP MT +EA+K
Sbjct: 200 GSGSLNAYGILDNHYKPKMTDDEARK 225
>Z81079-4|CAB03081.1| 236|Caenorhabditis elegans Hypothetical
protein F39H11.5 protein.
Length = 236
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = +2
Query: 152 PHSTGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAI 331
P TGTS++A ++ GVV+ D + G + + K+ D + G AD +
Sbjct: 13 PTCTGTSVIALQYKTGVVVLTDRVVSYGKMARYKNVSRQYKVNDNVLIAFGGDHADFHWL 72
Query: 332 ADIV 343
+++
Sbjct: 73 QNVI 76
>AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome alpha
subunit protein 3 protein.
Length = 250
Score = 33.1 bits (72), Expect = 0.17
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 9/116 (7%)
Frame = +2
Query: 197 GVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIVTYHLNFHKMEL 376
G+V+ A+ + + +T+K+ +++D I C +G AD + + + + ++
Sbjct: 42 GIVVAAERKNVHKLLDDSVMTEKVYRLSDNISCTVAGITADANILINHLRWWAASYRNSY 101
Query: 377 XDPPLVETAAAIFRELCYNYRDSLMAG--------ILVAGWDKKKGAQIY-SIPIG 517
+ VE + + LC + G +L GWDK G Q+Y S P G
Sbjct: 102 GEEMPVE---QLVQNLCNEKQRYTQIGGKRPFGVSLLYIGWDKHYGYQLYQSDPSG 154
>Z82265-5|CAB05175.1| 334|Caenorhabditis elegans Hypothetical
protein F02H6.7 protein.
Length = 334
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +2
Query: 404 AAIFRELCYNYRDSLMAGILVAGW-DKKKGAQIYSIPIG 517
A+ FRE Y+Y L VAGW DK +I P G
Sbjct: 248 ASNFRESFYSYNYKLEKDSAVAGWIDKAGNCEIADFPTG 286
>Z81048-3|CAB02841.1| 407|Caenorhabditis elegans Hypothetical
protein C41G7.4 protein.
Length = 407
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 8 VNSXCLSKNPIINVYATKN*VYYLLPAKMATSVINTYSDP 127
+ C S NPI+ Y +N Y L K+ IN+ S P
Sbjct: 108 IRCDCCSSNPIVPCYENENCPCYKLNQKLQGLQINSSSHP 147
>Z81028-3|CAB02691.1| 545|Caenorhabditis elegans Hypothetical
protein B0365.6 protein.
Length = 545
Score = 28.3 bits (60), Expect = 4.8
Identities = 23/99 (23%), Positives = 36/99 (36%)
Frame = +2
Query: 134 PEWMSAPHSTGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSA 313
P W+ S + +C++D D G Y L ++ + +Y SGS
Sbjct: 79 PYWLGIKCSLSGNPASCQWD-------DQSGNAGGYNGFAPGYPLVEVGNCVYVPTSGSF 131
Query: 314 ADTQAIADIVTYHLNFHKMELXDPPLVETAAAIFRELCY 430
A D T LNF P+ +T + + CY
Sbjct: 132 AGKWLSGDCNTMSLNFICETAPTSPITDTCSFQYNGNCY 170
>Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical
protein D1054.2 protein.
Length = 231
Score = 27.5 bits (58), Expect = 8.3
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Frame = +2
Query: 263 KLTKITDQIYCCRSGSAADTQAIAD----IVTYHLNFHKMELXDPPLVETAAAIFRELCY 430
K+ +I+ I C SG D + + I + + E+ LV AA+ +E
Sbjct: 60 KVEQISKHIGCVYSGMGPDFRILVKKARKIAMEYEMMYGEEMPTIQLVTDIAAVMQEYTQ 119
Query: 431 NYR-DSLMAGILVAGWDKKKG 490
+ A +L+AGWDK G
Sbjct: 120 SGGVRPFGASLLIAGWDKNPG 140
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,787,007
Number of Sequences: 27780
Number of extensions: 276938
Number of successful extensions: 615
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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