Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_L15
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr... 35 0.012
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch... 27 2.3
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 26 4.1
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch... 26 4.1
SPAC2C4.09 |||DUF1640 family protein|Schizosaccharomyces pombe|c... 26 4.1
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.4
SPAC3H5.04 |aar2||U5 snRNP-associated protein Aar2|Schizosacchar... 26 5.4
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi... 26 5.4
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 25 7.2
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 25 7.2
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 7.2
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 25 9.5
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 25 9.5
>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 34.7 bits (76), Expect = 0.012
Identities = 18/55 (32%), Positives = 31/55 (56%)
Frame = +1
Query: 481 RELSQNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGITRSIIRQAPXKLVLIE 645
++ Q+ L P + IV + Q+ TV EVGPG G +T ++ +A K++ +E
Sbjct: 26 KDFGQHILKNPLVAQGIVDKADLKQSDTVLEVGPGTGNLTVRMLEKA-RKVIAVE 79
>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 27.1 bits (57), Expect = 2.3
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +1
Query: 283 TIGAGVLG-VYLYSIFAIKQETFLARFRRAPENTAVIMAVAKTALQIRLPPLPSIXDVIK 459
TIGAG +G V L ++ L P NT+ + V + AL RL P+I VI
Sbjct: 58 TIGAGSMGKVKLVVNILTGEKAALKMIPFTPNNTSQTVRVQREALLGRLLRHPNICRVID 117
Query: 460 LYKLRALRELSQNFLMEPRLIDKIV 534
+ A + ++ +L++ I+
Sbjct: 118 CIRTPACTYILFEYVPGGQLLEYIL 142
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 162 STRSSAQAGRNSLYEINRREKSRTRSKITSD 254
S R A R++L + NR+ KS+ + ITSD
Sbjct: 31 SRRKGKSALRSALEKKNRKSKSKPKVTITSD 61
>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 684
Score = 26.2 bits (55), Expect = 4.1
Identities = 8/28 (28%), Positives = 20/28 (71%)
Frame = -1
Query: 404 LATAMITAVFSGARRNRARNVSCLMAKI 321
+A +++ +FS +NRA N++C+++ +
Sbjct: 419 IADSILLNMFSPTSKNRATNINCVLSNL 446
>SPAC2C4.09 |||DUF1640 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 216
Score = 26.2 bits (55), Expect = 4.1
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = +3
Query: 129 RLRI*TENQWYSTRSSAQAGRNSLYEINRREKSRTRSKITSDFETQSTDWLHDRSRSVGC 308
+L I N + T S R EI+ E S R+++ S F+TQ+ W+ G
Sbjct: 149 QLNIDRLNHYDETASQDLKLRELSAEIDT-EMSNFRTQLAS-FKTQTLQWVFGIVTGSGA 206
Query: 309 LLVFYLR 329
LL+ Y+R
Sbjct: 207 LLLAYVR 213
>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 527
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = +2
Query: 281 SR*EPECWVFTCILSSPSNRRRSLHD 358
SR P FT IL S +NR SLHD
Sbjct: 482 SRKVPVTHTFTYILISKTNRWNSLHD 507
>SPAC3H5.04 |aar2||U5 snRNP-associated protein
Aar2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 346
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = -3
Query: 330 GEDRIQVNTQHSGSYREASQSIAFRNHL*FLNAFAISLFD*FHISYFGLLEHW 172
G +R + S ++ QS+ N + L +IS +S++G LEHW
Sbjct: 165 GPERSKQAIDKSFLFQRLVQSVWNDNPISALAELSISFLSYSILSHYGALEHW 217
>SPAC20G8.04c |||mitochondrial electron transfer
flavoprotein-ubiquinone
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 25.8 bits (54), Expect = 5.4
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 478 LRELSQNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGITRSI-IRQAPXK 630
L EL+ N R +D I R +++ VC VG GP G++ +I I+Q K
Sbjct: 71 LNELTDNL----RKLDTIER---EVEDVDVCIVGAGPAGLSAAIRIKQQAAK 115
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +1
Query: 130 DSAYKPKISGTQQDPVLKQAEIAYMKLIEERNRERVQKLQV 252
+S+Y S + +LK + + +EE+N+ERV L++
Sbjct: 371 NSSYAQDSSTIPEKTLLKDTFLQNREALEEQNKERVTALEL 411
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 525 QNSACLR*YSKSYRL*SWTRPGWNN 599
+NSAC R Y ++ R SW+R NN
Sbjct: 100 RNSACDRYYQEALRKKSWSRSLSNN 124
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 258 ETQSTDWLHDRSRSVGCLLVFYLRHQTGDVP 350
+ S+ WL DR + L F L+ T +VP
Sbjct: 1138 QDHSSKWLFDRQVDILTALFFTLKDTTSEVP 1168
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/49 (22%), Positives = 26/49 (53%)
Frame = +1
Query: 124 MGDSAYKPKISGTQQDPVLKQAEIAYMKLIEERNRERVQKLQVISKRNR 270
+ +S YK + Q +L Q + +++++ + ++LQ +SK N+
Sbjct: 462 LAESTYKELMDRVQNKDLLCQEQARKLEVLDLNVKSSREQLQYVSKSNQ 510
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 366 SPRKYSSNHGRR*NCITDKAASTT 437
SPR+ S HG R C++ A+S++
Sbjct: 507 SPRRKGSRHGPREPCLSPDASSSS 530
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,594,155
Number of Sequences: 5004
Number of extensions: 51346
Number of successful extensions: 138
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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