Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_L15
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0111 + 5381779-5382117,5382775-5382798 42 4e-04
07_03_0548 + 19349943-19350290,19350372-19351100 38 0.007
02_01_0175 - 1198657-1198737,1199080-1199190,1199488-1199540,120... 34 0.085
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 32 0.46
08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817 29 3.2
05_04_0322 + 20239793-20240127,20240176-20240728,20241317-202414... 28 5.6
11_01_0052 - 396822-396965,397332-397541,397686-397815,397956-39... 28 7.4
06_03_1032 + 27029698-27029785,27030640-27031275,27031739-270319... 28 7.4
06_03_0102 - 16662937-16663245 28 7.4
12_01_0053 - 438527-438670,439038-439247,439401-439530,439672-43... 27 9.8
>10_02_0111 + 5381779-5382117,5382775-5382798
Length = 120
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +1
Query: 493 QNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGITRSIIRQAPXKLVLIE 645
Q+ L P L+D IV +G TV E+GPG G +T+ +++ +V +E
Sbjct: 40 QHILRNPALVDSIVEKAGLKPTDTVLEIGPGTGNLTKRLLQAGVKAVVAVE 90
>07_03_0548 + 19349943-19350290,19350372-19351100
Length = 358
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +1
Query: 466 KLRALRELSQNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGITRSIIRQAPXKLVLIE 645
+ R + Q+ L PR++D IVR + V EVGPG G +T ++ ++ +E
Sbjct: 34 RFRLHKPRGQHLLTNPRVLDAIVRRAALRPGDAVLEVGPGTGNLTVRLLESPAARVSAVE 93
>02_01_0175 -
1198657-1198737,1199080-1199190,1199488-1199540,
1200131-1200215,1200519-1200614,1200729-1200821,
1201640-1201696,1201826-1201975,1202819-1202893
Length = 266
Score = 34.3 bits (75), Expect = 0.085
Identities = 14/52 (26%), Positives = 32/52 (61%)
Frame = +1
Query: 493 QNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGITRSIIRQAPXKLVLIEK 648
+N+++ ++ +++V A+G + V E+GPG G +T +++ A + +EK
Sbjct: 25 ENYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTAALL-DAGATVFAVEK 75
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 31.9 bits (69), Expect = 0.46
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +3
Query: 126 GRLRI*TENQWYSTRSSAQAGRNSLYEINRREKSRTRSKITSDFETQSTDWLHDRSRSVG 305
G L I +Q + ++Q G+N + EKS T ++ F L D +RS+G
Sbjct: 455 GELNIHNADQIRNEDPTSQVGKNKTKR-GKAEKSVTLEELQKHFSGS----LKDAARSLG 509
Query: 306 C-LLVFYLRHQTGDVPCTISTSPRKYSS 386
V YL HQ DV I+T P K S
Sbjct: 510 AGYSVDYL-HQNPDVYAQINTQPLKVGS 536
>08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817
Length = 958
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 156 WYSTRSSAQAGRNSLYEINR-REKSRTRSKITSDFETQSTDWLHDRSRSVG 305
W +R + R+ I R R +SR+RS+ + F + ++W +RSRS G
Sbjct: 180 WNRSRRNRSRSRSRSRSIGRGRGRSRSRSR-SPYFSDRGSEWRVERSRSSG 229
>05_04_0322 +
20239793-20240127,20240176-20240728,20241317-20241425,
20244456-20244723,20244943-20245197,20245594-20246539
Length = 821
Score = 28.3 bits (60), Expect = 5.6
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Frame = +1
Query: 211 IEERNRERVQKLQVISKRNRLTGFTIGA---GVLGVYLYSIFAIKQETFLARFRRAP--E 375
+ R R R ++ +V + L +GA G LG + ++ + AR P E
Sbjct: 106 VRARRRRRGRRCEVAATVGVLEAAVVGAVQGGALGGLMGTLASDSGSQAAARGEANPLAE 165
Query: 376 NTAVIMAVAKTALQIRLPPLP 438
+ A A+A + + +LPPLP
Sbjct: 166 SAAASYALAAASAESQLPPLP 186
>11_01_0052 -
396822-396965,397332-397541,397686-397815,397956-398126,
398723-398827,398940-399613,399659-399688,399756-399932
Length = 546
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 277 GFTIGAGVLGVYLYSIFAIKQETFLARFRR 366
G ++GA +LGV L I + +T++ R RR
Sbjct: 102 GISVGASLLGVLLILIVCLTLQTWIKRSRR 131
>06_03_1032 +
27029698-27029785,27030640-27031275,27031739-27031993,
27032451-27032605,27032704-27032783,27032891-27033026,
27033228-27033377,27033474-27033641
Length = 555
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +1
Query: 370 PENTAVIMAVAKTALQIRLPPLPSIXDVIKLYKLRALRE-LSQNFLMEPRLIDKIVRASG 546
PE A I+AVA + PS+ V++ L+ RE L + P+L+ ++ SG
Sbjct: 474 PEEMAHILAVASMCIHHSSSSRPSMKSVVRF--LKGDRESLEMMQMQRPKLMKPLMFDSG 531
Query: 547 NIQNHT 564
+ +++T
Sbjct: 532 DSEDYT 537
>06_03_0102 - 16662937-16663245
Length = 102
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 493 QNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPG 591
Q+ L P L+D IV +G TV E+G G
Sbjct: 39 QHILRNPALVDSIVEKAGLKPTDTVLEIGSARG 71
>12_01_0053 -
438527-438670,439038-439247,439401-439530,439672-439842,
440233-440355,440439-440543,440656-441332,441498-441604,
441970-442177,442178-442245,444209-444411,444580-444663,
444780-445109,445238-445438,445667-445744,446236-446306
Length = 969
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 277 GFTIGAGVLGVYLYSIFAIKQETFLARFRR 366
G ++GA +LGV L I + +T++ R RR
Sbjct: 483 GISVGASLLGVLLILIVCLTIQTWIKRSRR 512
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,889,636
Number of Sequences: 37544
Number of extensions: 307201
Number of successful extensions: 684
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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