Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_L15
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88169-5|AAB42235.2|  367|Caenorhabditis elegans Hypothetical pr...    77   8e-15
U29381-1|AAA68751.2|  133|Caenorhabditis elegans Hypothetical pr...    42   4e-04
Z47075-1|CAA87382.2|  308|Caenorhabditis elegans Hypothetical pr...    33   0.23 
U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,...    28   5.0  
AC024791-21|AAF60666.1|  749|Caenorhabditis elegans Rnp (rrm rna...    28   5.0  
U64856-1|AAB04985.2|  429|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AC006607-1|AAY44022.1|  208|Caenorhabditis elegans Hypothetical ...    27   8.7  

>U88169-5|AAB42235.2|  367|Caenorhabditis elegans Hypothetical
           protein T03F1.7 protein.
          Length = 367

 Score = 77.4 bits (182), Expect = 8e-15
 Identities = 35/75 (46%), Positives = 52/75 (69%)
 Frame = +1

Query: 421 RLPPLPSIXDVIKLYKLRALRELSQNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGIT 600
           RLPPLP++ D I +Y+LRA + LSQN+LM+  +  KI + +  I+   V E+GPGPGGIT
Sbjct: 6   RLPPLPALRDFIHMYRLRAKKILSQNYLMDMNITRKIAKHAKVIEKDWVIEIGPGPGGIT 65

Query: 601 RSIIRQAPXKLVLIE 645
           R+I+     +L ++E
Sbjct: 66  RAILEAGASRLDVVE 80


>U29381-1|AAA68751.2|  133|Caenorhabditis elegans Hypothetical
           protein F35D11.5 protein.
          Length = 133

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 18/58 (31%), Positives = 38/58 (65%)
 Frame = +1

Query: 178 LKQAEIAYMKLIEERNRERVQKLQVISKRNRLTGFTIGAGVLGVYLYSIFAIKQETFL 351
           L + +  + K  E+ N+ERV+++   + +N ++   +   V+G+Y Y+++++KQETFL
Sbjct: 55  LPRPQKRFAKQFEKVNQERVKEIFAKNYKNHISFAVLLGVVIGIYWYTMYSVKQETFL 112


>Z47075-1|CAA87382.2|  308|Caenorhabditis elegans Hypothetical
           protein E02H1.1 protein.
          Length = 308

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 493 QNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGITRSIIRQA 621
           Q+ L  P +++ IV  S      TV EVGPG G +T  ++  A
Sbjct: 30  QHILKNPGVVNAIVEKSALKATDTVLEVGPGTGNLTVKMLEVA 72


>U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,
           class iii (c) protein1 protein.
          Length = 1400

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/51 (37%), Positives = 29/51 (56%)
 Frame = +1

Query: 337 QETFLARFRRAPENTAVIMAVAKTALQIRLPPLPSIXDVIKLYKLRALREL 489
           ++TFL R        A+I A AK   +IR+PP P+I   ++L+  + L EL
Sbjct: 551 KDTFLPRAEVYRFAAALIDASAKKQTKIRIPP-PAIRRPVELWTGKQLIEL 600


>AC024791-21|AAF60666.1|  749|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 6, isoform b protein.
          Length = 749

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 373 ENTAVIMAVAKTALQIRLPPL-PSIXDVIK 459
           EN AVI +  K   +I +PPL PS  DV+K
Sbjct: 360 ENKAVISSPKKEPEEIEVPPLPPSAPDVVK 389


>U64856-1|AAB04985.2|  429|Caenorhabditis elegans Hypothetical
           protein T25F10.3 protein.
          Length = 429

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
 Frame = +1

Query: 151 ISGTQQDPVLKQAEIAYMKLIEERNRERVQKLQVISKRNRLTG----FTIGAGVLGVYLY 318
           ISGT    V+    +  M L+  ++R +VQ     S+R  +      + I  G  G    
Sbjct: 262 ISGTVFSLVMIVVLVVSMYLLM-KHRMQVQSQYTSSRREEMNRAAQIYGIERGGAGTTTI 320

Query: 319 SIFAIKQETFLARFRRAPENTAVIMAVAKTALQIRLPPLPSIXDVIK 459
           S   I+   F+A   + P       AV++TA +  LPPLPS  D  K
Sbjct: 321 SRDDIRILPFVAAGIQPPPP----YAVSRTARREALPPLPSYEDATK 363


>AC006607-1|AAY44022.1|  208|Caenorhabditis elegans Hypothetical
           protein C09E7.10 protein.
          Length = 208

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
 Frame = +1

Query: 256 SKRNRLTGFTIGAGVLGVYLYSIFA-------IKQETFLARFRRAPENTAVIMA 396
           SK ++L  F+I   V+G  LY+ F+       + +E   AR R     +A+IMA
Sbjct: 129 SKSSQLMSFSILGSVIGFILYTYFSHVIMMRKLNREREAARLRELVHRSALIMA 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,179,937
Number of Sequences: 27780
Number of extensions: 283163
Number of successful extensions: 646
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)